Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55800 48 / 2e-06 Domain of unknown function (DUF2431) (.1) AT1G55790 47 / 3e-06 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016345 [exp] 61 / 1e-10 AT1G55790 183 / 2e-53 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10000235 [exp] 53 / 6e-08 AT1G55790 176 / 7e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10002759 [exp] 53 / 6e-08 AT1G55790 176 / 7e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10039534 [exp] 51 / 2e-07 AT1G55790 173 / 9e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10032898 [exp] 41 / 0.0005 AT1G55790 232 / 2e-72 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G438100 [exp] 47 / 4e-06 AT1G55790 207 / 4e-64 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G141700 [exp] 45 / 1e-05 AT1G55790 198 / 1e-60 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.006G002700 [exp] 43 / 7e-05 AT1G55790 185 / 1e-55 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.003G101200 [exp] 42 / 0.0001 AT1G55790 276 / 8e-88 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G165600 [exp] 42 / 0.0002 AT1G55790 275 / 2e-88 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.001G438200 [exp] 41 / 0.0003 AT1G55790 169 / 1e-48 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G141900 [exp] 40 / 0.0007 AT1G55790 219 / 7e-69 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10354 [flax] [poplar] DUF2431 Domain of unknown function (DUF2431)
Representative CDS sequence Show only first row Show all	>Lus10016346 pacid=23161795 polypeptide=Lus10016346 locus=Lus10016346.g ID=Lus10016346.BGIv1.0 annot-version=v1.0 ATGGGTCGAATCGTATCCTACATTCTTCGCCGTCTCTGTGGCGAAGAAGAAGAAGAAGAACAGAGTCGTCCCCTGCCTCCACCAACCACCCATGATGATG ATCAGCTCTGTTCGCAACTCTTCCATTCTCAAATCCCTAACAATGCCAGAAAACTGCAGCAGCAGGAGCAAGGGTTGTTGGTGGTTTTAGAACAAAAATC TAAATCTTCTTGTTTGGCCATCAAATTCTGCTATACTCTCAACATTACTGCCACTTCTCTCAACTCCAAAGTACCTGATTTGTCTTTCTGTGGCATTTCA AAATGTGACATTTCAAATAATTCACTTTCGAATTTGATCAACGAGCCGAGGCATCATGACAGCAAGAAAGGAGGTGGAGCGAGGCGAAAGTTTTTTCGTG ATCAAGGCTTGTTGGTTGTTCTAGAAAAGAGTAGTAGAGATCCAAAACCCTTTGTGTTTCGAGATCGAGCCAACGCGAGTCTGTTTCGAAGAGACTGGAG GAGATTTGGAGATGAAGTCAAGATATGGAGAGTGGTGGGAGTGGTGAATGATGAGGTGTGGAAGAAGCATTACTGCAGCAGGCACAAAATACTTCTGGTT GGAGAAGGAGACTTCTCTTTCTCTTCCAGCTTGGCTTTCGCCTTTGGCTCAGCTGTCAACATCATTGCTACTTCTCTTGATTCCTAA
AA sequence Show only first row Show all	>Lus10016346 pacid=23161795 polypeptide=Lus10016346 locus=Lus10016346.g ID=Lus10016346.BGIv1.0 annot-version=v1.0 MGRIVSYILRRLCGEEEEEEQSRPLPPPTTHDDDQLCSQLFHSQIPNNARKLQQQEQGLLVVLEQKSKSSCLAIKFCYTLNITATSLNSKVPDLSFCGIS KCDISNNSLSNLINEPRHHDSKKGGGARRKFFRDQGLLVVLEKSSRDPKPFVFRDRANASLFRRDWRRFGDEVKIWRVVGVVNDEVWKKHYCSRHKILLV GEGDFSFSSSLAFAFGSAVNIIATSLDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55800			Domain of unknown function (DU...		Lus10016346 [exp]	0	1
AT1G80080		AtRLP17, TMM	TOO MANY MOUTHS, Receptor Like...		Lus10042458 [exp]	1.7	0.9210
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10002587 [exp]	2.8	0.8962
AT1G17630			Pentatricopeptide repeat (PPR-...		Lus10002512 [exp]	3.2	0.8509
					Lus10006808 [exp]	3.5	0.8948
AT3G10080			RmlC-like cupins superfamily p...		Lus10020631 [exp]	5.3	0.8660
AT3G06240			F-box family protein (.1)		Lus10014935 [exp]	5.7	0.7262
AT1G80080		AtRLP17, TMM	TOO MANY MOUTHS, Receptor Like...		Lus10026208 [exp]	6.0	0.8416
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10017350 [exp]	7.5	0.8311
AT1G36390			Co-chaperone GrpE family prote...		Lus10042696 [exp]	8.5	0.8178
					Lus10027332 [exp]	12.5	0.6892

Compare expression of checked genes

Lus10016346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.