Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07940 479 / 2e-164 Calcium-dependent ARF-type GTPase activating protein family (.1) AT4G05330 348 / 3e-114 AGD13 ARF-GAP domain 13 (.1) AT4G21160 343 / 2e-112 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT1G73580 146 / 2e-40 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G66360 143 / 3e-39 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G70790 137 / 3e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G70800 129 / 1e-34 EHB1 ENHANCED BENDING 1, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G47710 129 / 1e-34 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G17980 128 / 5e-34 AtC2 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G01540 128 / 6e-34 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002760 [exp] 1330 / 0 AT3G07940 480 / 2e-164 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10039538 [exp] 630 / 0 AT3G07940 490 / 4e-171 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10024165 [exp] 629 / 0 AT3G07940 491 / 1e-171 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10038539 [exp] 325 / 1e-105 AT4G21160 491 / 4e-176 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Lus10023265 [exp] 310 / 2e-99 AT4G21160 495 / 3e-177 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Lus10033585 [exp] 141 / 1e-38 AT3G17980 244 / 1e-83 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10038745 [exp] 140 / 3e-38 AT5G47710 241 / 1e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10039113 [exp] 139 / 9e-38 AT5G47710 239 / 6e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10009684 [exp] 141 / 1e-37 AT3G17980 254 / 1e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G198301 [exp] 529 / 0 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.T125706 [exp] 529 / 0 AT3G07940 503 / 8e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.001G372000 [exp] 355 / 4e-117 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.011G098500 [exp] 353 / 4e-116 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.001G026400 [exp] 239 / 2e-73 AT3G07940 211 / 4e-66 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.012G047100 [exp] 146 / 2e-40 AT3G17980 251 / 2e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G131500 [exp] 145 / 3e-40 AT3G17980 202 / 5e-67 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.004G089500 [exp] 139 / 6e-38 AT3G17980 245 / 4e-84 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G004600 [exp] 139 / 8e-38 AT5G47710 270 / 3e-94 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.017G125500 [exp] 138 / 1e-37 AT3G17980 249 / 6e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0154 [flax] [poplar] PF01412 [flax] [poplar] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Lus10016347 pacid=23161906 polypeptide=Lus10016347 locus=Lus10016347.g ID=Lus10016347.BGIv1.0 annot-version=v1.0 ATGGCTTCACTACCGTACAATGGTGATGACCATGCGCCGACAGGAGCAACATATGCCGTAAACCCACAAGCTGGCCTAGAATTTCCAACCAGCCAACACC AGCCAATGGCTAGTCAACAGAATCCACAACGGACAGTGGCTAACTTACAATCTCTATTTGACAGTTCACAACAGCTACCGGCTACCCGACGTTCTCCTTC ACCACCATCTGACCACCAACAACTCCCACTAAAAAGTGCAGAACCATCAACTCGTCTGGAACAACCAGATCGTTTAGAGCATGATGCTCGTCATCAAATG CCGTCTGCTAGCCTACAGTTCCCATCATTTAGTCATTTTCTGGAACCAGATCGCTCACAACTGTCTCCAGGTAACCCCAAACCCTCTGCTAGCCATGAAC CAATACCTGAGAGCCATCAACCACTATTTGTTGCACCGAAGTTGCCATCTCCTAGCCAAGAGAAACCATCTGATGTTGTGCATGAACCAACTAGCCATCG AGCATCACTAGATAGTCATGACCAATTGGAGAGCCACTCACATCCATCGTCCGGATTGGACTTGGAAACTCCAACTACCCAGCATCAACCATTAAACAGC AAGCAACAGTCAGAAACTACCCTGCAACCAAAACCCAGGCAGAAAAAACCATCTATAACCTTTAAACTCCCAGGTGATAGCCTAGAGAAATCACCACTGA CTGGCCAAGAGGTTGCAGGGCAAGCTCCCTCCCACCAGCAGCTCCCTTCAGGCAACCATCAACCGTCATCAGCTTGTCAACAACCCACACCAAATGTTCG AGAATCCTCAATTAACCATCGACCTGGTCATCGATCAACAACGAATGGATCACAACCTCCATCAACTGGTCAACAGCATCCACAACAACTGCCATCAGAG AATCTAAAATCTTCACCTAATCATCAACCTGCACCGGGTGGCCGACGAAATGTGGAAGGCCGAAAATCATCTTCAGGTAGTCTACAATCATGGGTAAGCC GTCAACTACAATTAAATCCTTTAAGGTCAACACCAGGTAACCTGCATTTACCGTCTGACTCCTCACAATCATCACAAGATCATAGCCAACATTCGACAAT GGCTAATCAATCATTGCCACATGCTAGCTCACAACGGTTTGCTGAAACAGAAATTCCACCTTCTAGCCTCGAACAAGCTCCATCTCCACAAAAAAGGTTG GAGAAGCTGCCGCGTCAATCATGCAATAAGCACTGTGCAGATTGTGGATCAACAGATCCAAAATGGGTATCTATAAGTCACGGAGTGTTTATTTGTATAA AGTGTTCTGGTGTTCATCGAAGCCTCGGAGTACATATCTCAAAGGTGTTATCAGTCAAGCTAGATGAATGGACAGATGATCAGGTCACTGCATTCATGGA GATGGGTGGGAACATAGTTGTGAACAAGAAAATGGAAGCTTACATCCCAGAAGATTGTAAGAAACCAAAATCCGATGCACCTATCGACGAGAGAGCTGAC TTCATCAGGAGAAAATATGAGATGCTAGAATTTACAGACTTCAGCGAACATATGATATGCCCCTATGACCCAAATAAACCGAACTCCAATGGCAATGGAT CTTGTCAGGACAAGAGGCATTATGAGAAACAAACAACCAGACACCGGATTGGAAGTGCATTGAGGAGCAGCTGGATAAGAAAAGACGCAGAGCACAAGCC ATCCAAGAAAAACATGTCTATGGCCGGCATGGTTGAATTTATTGGGTTAGTCAAGGTCAATGTGGTGAAAGGAACCAATCTGGCCATCAGAGATATGGTA ACAAGTGACCCCTACGTCATCCTTGCATTAGGTCATCAATCAGTAAGGACCCGAGTGATAAAGAGCAACCTGAATCCTGTGTGGAACGAGAGCCTTATGC TGTCAATACCAGATGACATTCCTCCTCTTAAAGTGATTGTTTTCGACAAGGACACATTCTCGACAGACGACTTCATGGGAGAAGCCGAGATCGACATTCA GCCTCTGGTTTCTGCAGCGAGGGCCTACGAGACTTCTTCGATAAACGAGTCGACTCAGCTTGGGAAGTGGATGGCGAGCCGGGACAATAGTCTGGTGAAA GATGGTGTGATCTCGTTGATAGATGGGAAAGTGAAGCAGGAAATCAGTCTGAGGCTGCAGAATGTTGAGAGGGGAGTGCTTGAGATTGAGCTCGAATGTG TCCCTCTCACTCAATAA
AA sequence Show only first row Show all	>Lus10016347 pacid=23161906 polypeptide=Lus10016347 locus=Lus10016347.g ID=Lus10016347.BGIv1.0 annot-version=v1.0 MASLPYNGDDHAPTGATYAVNPQAGLEFPTSQHQPMASQQNPQRTVANLQSLFDSSQQLPATRRSPSPPSDHQQLPLKSAEPSTRLEQPDRLEHDARHQM PSASLQFPSFSHFLEPDRSQLSPGNPKPSASHEPIPESHQPLFVAPKLPSPSQEKPSDVVHEPTSHRASLDSHDQLESHSHPSSGLDLETPTTQHQPLNS KQQSETTLQPKPRQKKPSITFKLPGDSLEKSPLTGQEVAGQAPSHQQLPSGNHQPSSACQQPTPNVRESSINHRPGHRSTTNGSQPPSTGQQHPQQLPSE NLKSSPNHQPAPGGRRNVEGRKSSSGSLQSWVSRQLQLNPLRSTPGNLHLPSDSSQSSQDHSQHSTMANQSLPHASSQRFAETEIPPSSLEQAPSPQKRL EKLPRQSCNKHCADCGSTDPKWVSISHGVFICIKCSGVHRSLGVHISKVLSVKLDEWTDDQVTAFMEMGGNIVVNKKMEAYIPEDCKKPKSDAPIDERAD FIRRKYEMLEFTDFSEHMICPYDPNKPNSNGNGSCQDKRHYEKQTTRHRIGSALRSSWIRKDAEHKPSKKNMSMAGMVEFIGLVKVNVVKGTNLAIRDMV TSDPYVILALGHQSVRTRVIKSNLNPVWNESLMLSIPDDIPPLKVIVFDKDTFSTDDFMGEAEIDIQPLVSAARAYETSSINESTQLGKWMASRDNSLVK DGVISLIDGKVKQEISLRLQNVERGVLEIELECVPLTQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10016347 [exp]	0	1
AT2G35795			Chaperone DnaJ-domain superfam...		Lus10036507 [exp]	1.7	0.7884
AT3G21810	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015103 [exp]	2.0	0.8162
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10000069 [exp]	9.1	0.7094
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10023530 [exp]	10.8	0.7903
AT2G33500	CO	COL14	B-box type zinc finger protein...		Lus10041526 [exp]	13.0	0.7435
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10021168 [exp]	13.7	0.7570
AT4G30580		LPAT1, ATS2, EM...	lysophosphatidic acid acyltran...		Lus10022158 [exp]	16.9	0.7612
AT1G05170			Galactosyltransferase family p...		Lus10001148 [exp]	17.2	0.7672
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10043133 [exp]	18.5	0.7649
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10033174 [exp]	23.9	0.7092

Compare expression of checked genes

Lus10016347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.