Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61790 458 / 9e-163 Protein with RING/U-box and TRAF-like domains (.1) AT4G27880 449 / 4e-159 Protein with RING/U-box and TRAF-like domains (.1) AT3G58040 443 / 6e-157 SINAT2 seven in absentia of Arabidopsis 2 (.1) AT2G41980 438 / 6e-155 Protein with RING/U-box and TRAF-like domains (.1) AT5G53360 363 / 1e-126 TRAF-like superfamily protein (.1) AT3G13672 218 / 9e-70 TRAF-like superfamily protein (.1.2) AT5G37870 102 / 1e-24 Protein with RING/U-box and TRAF-like domains (.1) AT5G37930 96 / 7e-22 Protein with RING/U-box and TRAF-like domains (.1) AT5G37890 93 / 2e-21 Protein with RING/U-box and TRAF-like domains (.1) AT5G37910 92 / 6e-21 Protein with RING/U-box and TRAF-like domains (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002761 [exp] 701 / 0 AT3G61790 462 / 1e-164 Protein with RING/U-box and TRAF-like domains (.1) Lus10022405 [exp] 461 / 2e-163 AT4G27880 553 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10018110 [exp] 461 / 2e-163 AT4G27880 553 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10004001 [exp] 447 / 2e-158 AT3G61790 525 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10030248 [exp] 440 / 2e-155 AT3G61790 514 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10013739 [exp] 439 / 4e-155 AT3G58040 493 / 6e-178 seven in absentia of Arabidopsis 2 (.1) Lus10039202 [exp] 436 / 5e-154 AT3G58040 488 / 1e-175 seven in absentia of Arabidopsis 2 (.1) Lus10009111 [exp] 57 / 3e-09 AT5G37930 134 / 5e-38 Protein with RING/U-box and TRAF-like domains (.1) Lus10028535 [exp] 56 / 5e-09 AT5G37930 134 / 7e-38 Protein with RING/U-box and TRAF-like domains (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G198600 [exp] 570 / 0 AT3G61790 473 / 2e-169 Protein with RING/U-box and TRAF-like domains (.1) Potri.T126006 [exp] 570 / 0 AT3G61790 473 / 2e-169 Protein with RING/U-box and TRAF-like domains (.1) Potri.001G026200 [exp] 525 / 0 AT3G61790 450 / 2e-160 Protein with RING/U-box and TRAF-like domains (.1) Potri.014G099200 [exp] 461 / 7e-164 AT3G61790 551 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.002G171500 [exp] 458 / 9e-163 AT3G61790 558 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.016G059700 [exp] 457 / 2e-162 AT3G58040 548 / 0.0 seven in absentia of Arabidopsis 2 (.1) Potri.012G015500 [exp] 455 / 2e-161 AT4G27880 542 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.006G194100 [exp] 454 / 2e-161 AT3G58040 560 / 0.0 seven in absentia of Arabidopsis 2 (.1) Potri.015G013000 [exp] 454 / 8e-161 AT4G27880 546 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.003G215400 [exp] 425 / 6e-150 AT3G58040 471 / 4e-169 seven in absentia of Arabidopsis 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [flax] [poplar] TRAF PF03145 [flax] [poplar] Sina Seven in absentia protein family
Representative CDS sequence Show only first row Show all	>Lus10016348 pacid=23161843 polypeptide=Lus10016348 locus=Lus10016348.g ID=Lus10016348.BGIv1.0 annot-version=v1.0 ATGATTGCACTCTACTGGAAGTTTGGTTGGGAAATTTTAGGACTTTATGAGGAATTTATGCGTAGGGCACTGAGAGTGAAATTGGTTCTAGGATGGTTGA CAGGGCGTCAGTCAAGGCCAGGGAGAAAGAAGAGGGCAGTAAAATCAACTTGGGAAGACGGTTTGGTGGCTTCCCTTCCCAATATGGCATCTGCTACCCC ATTTCTTGAGGACCTGAGAATAAAACCGGAAGTGATTGCTCCTCCTCAAGTTGAAGAATTGATGGATATTGATGAAACAATCAATGATCCTTCACAACCT GCTTTGAAACCGAATGTCACCGTGACTAGCAACGTCAGAGATTTATTGGAATGCCCTGTCTGTCGCAATGCTATGTATCCGCCGATTCATCAGTGTTCTA ATGGACATACGTTATGTTCTGCTTGCAAGCCTCGGGTTCATAACCGTTGTCCCACTTGCAGACATGAACTAGGCAACATCAGATGTCTGGCACTAGAAAA GGTTGCGGCTTCGCTTGAATTGCCATGTAAATATCAGAGCTTTGGGTGCTTAGGGATCTACCCTTACTACAGCAAGTTGAAACATGAATCCCAATGCAGT TATAGGCCGTATAACTGCCCTTACGCTGGATCTGAATGCACCGTTATTGGTGATATTCCAAATCTTGTAAACCATCTCAAGGATTATCACAAAGTCGATA TGCACTGTGGCAGTACTTTTAACCATCGTTATGTCAAGGCCAATCCTCACGAGGTCGAGAACGCAACTTGGATGCTAACGGTATTCAGTTGCTATGGTCA ATATTTCTGTCTGCACTTTGAAGCATTCCAGCTCGGAACAGCTCCAGTGTACATAGCTTTCCTGCGGTTCATGGGTGACGATAATGAGGCAAAGAACTAC AACTATAGCCTGGAGGTGGGAGGCAACGGGAGGAAGATTACATGGCACGGCGTACCTAGGAGCATAAGAGACAGCCACCGGAAGGTTAGAGACAGCTTTG ATGGTCTAATCATCCAGAGGAACATGGCACTTTTCTTCTCTGGTGGAGACAGGAAGGAGTTGAAACTTAGGGTTACAGGAAGGATATGGAAAGATCAGTA A
AA sequence Show only first row Show all	>Lus10016348 pacid=23161843 polypeptide=Lus10016348 locus=Lus10016348.g ID=Lus10016348.BGIv1.0 annot-version=v1.0 MIALYWKFGWEILGLYEEFMRRALRVKLVLGWLTGRQSRPGRKKRAVKSTWEDGLVASLPNMASATPFLEDLRIKPEVIAPPQVEELMDIDETINDPSQP ALKPNVTVTSNVRDLLECPVCRNAMYPPIHQCSNGHTLCSACKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSFGCLGIYPYYSKLKHESQCS YRPYNCPYAGSECTVIGDIPNLVNHLKDYHKVDMHCGSTFNHRYVKANPHEVENATWMLTVFSCYGQYFCLHFEAFQLGTAPVYIAFLRFMGDDNEAKNY NYSLEVGGNGRKITWHGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61790			Protein with RING/U-box and TR...		Lus10016348 [exp]	0	1
AT3G61790			Protein with RING/U-box and TR...		Lus10002761 [exp]	1.0	0.8551
AT1G52500		ATMMH-2, ATMMH-...	FORMAMIDOPYRIMIDINE-DNA GLYCOS...		Lus10035876 [exp]	10.8	0.7550
AT3G27050			unknown protein		Lus10032042 [exp]	20.0	0.7467
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10032659 [exp]	25.0	0.7190
AT4G38495			unknown protein		Lus10029400 [exp]	31.7	0.7145
AT1G72640			NAD(P)-binding Rossmann-fold s...		Lus10000373 [exp]	34.3	0.7432
AT2G37025		TRFL8	TRF-like 8 (.1.2)		Lus10026522 [exp]	42.3	0.7046
AT2G34930			disease resistance family prot...		Lus10016339 [exp]	46.9	0.6550
AT1G16650			S-adenosyl-L-methionine-depend...		Lus10005589 [exp]	47.9	0.7092
AT3G62920			unknown protein		Lus10005942 [exp]	50.8	0.6572

Compare expression of checked genes

Lus10016348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.