Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07300 561 / 0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) AT2G44070 105 / 4e-25 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT5G38640 100 / 1e-22 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT1G48970 95 / 9e-21 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT1G53900 91 / 1e-19 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G53880 91 / 1e-19 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G72340 81 / 1e-16 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT2G05830 79 / 5e-16 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002762 [exp] 702 / 0 AT3G07300 624 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Lus10037451 [exp] 92 / 9e-21 AT1G53900 479 / 6e-172 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Lus10003938 [exp] 92 / 4e-20 AT1G53900 597 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Lus10027234 [exp] 89 / 8e-19 AT5G38640 704 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Lus10038944 [exp] 88 / 2e-18 AT5G38640 694 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Lus10008417 [exp] 75 / 2e-14 AT2G05830 543 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4) Lus10001970 [exp] 72 / 2e-13 AT2G05830 538 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G026100 [exp] 610 / 0 AT3G07300 632 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.003G199301 [exp] 598 / 0 AT3G07300 595 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.T126106 [exp] 596 / 0 AT3G07300 595 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.010G068600 [exp] 486 / 1e-171 AT3G07300 482 / 3e-170 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.004G103700 [exp] 98 / 9e-22 AT5G38640 792 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.001G163300 [exp] 96 / 1e-21 AT1G53900 589 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Potri.003G072100 [exp] 92 / 4e-20 AT1G53900 587 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Potri.006G219900 [exp] 75 / 1e-14 AT2G05830 526 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [flax] [poplar] ISOCOT_Fold PF01008 [flax] [poplar] IF-2B Initiation factor 2 subunit family
Representative CDS sequence Show only first row Show all	>Lus10016349 pacid=23161892 polypeptide=Lus10016349 locus=Lus10016349.g ID=Lus10016349.BGIv1.0 annot-version=v1.0 ATGCCGGACGTCCAGGCCTTCGTTAATGACTTCCTCAGCAAGCTTAAGAAACGTAAAATTGAGGGCTCTCAAGCAACAGCAAAGCTGACCGCTGAAATCC TTCGCTCAGTGATATCGCAGCAGCGGGTGCCTCATACGAATCAGGCCGGGGCCTTGATAGATGCTGTTGCAGCTATCGGACGGCAGCTAATGGCTGCAAA TCCTGTTGAGCTTGCTGTGGGAAATATTGTGAGGCGTGTTATAAACATTATCAGAGAAGAGGACCTTTCATTGACAACAGCTGCGGTTGGGGAGTTGAAC TTGTCAACAGCGAGTGATGACGACAATGACCTTGATCATGATGATCATCCACTTCTATCAGCAGCTGCCGCAGCAGCTGAATCAAGAAGCACACTACGCC CACCATCCTTGCAATTGTTACTGGAGGGTGCACCTGATTCTGTTGCTGTTCCTCAACCAGCTTCATCTGGTGGTGATTCTGAAGAGAAAAGCAAATCTCA TGATAAGAATTCAAGTACTCGAAAGCTGAAGCATGATGTCATTGAATCAGTTAATGAGCTCATCCAAGATATCACAACGTGCCATGAACTGATTGCTGAG CAAGCTGTGGAGCATATTCATCACAATGAGGTAATATTAACTTTAGGAAGTTCAAAAACAGTGTTTGAGTTCCTGTGTGCTGCGAAAGAGAAGAAAAGAT CATTCCGAGTATTTGTTGCTGAGGGTGCTCCAAGGTATCAGGGGCATCAACTGGCAAAAGAATTAGTTGCAAGGGGATTGCAGACCACCTTGATTGCTGA TTCTGCAGTTTTCGCTATAATATCTCGAGTAAACAAGGTTATAGTTGGAGCTCATGCTGTGATGTCCAATGGCGGGGTCATAGCTCCTGTTGGAATGAAT ATGGTTGCGCTAGCTGCTCAAAAGCATGCTGTTCCTTTTGTTGTGCTTGCTGGCAGTCATAAGCTGTGCCCCTCATATCCTCACAATCCGGAGGTCACCT TGAATGAGCTGAGGTCCCCATCAGAGCTGCTAGATTTCGGAGAATTTTCTGATTGCTTAGACTATGGGATTGGCAACAATGGCTCTCCTCTCCTTCATGT TGTTAACCCAACATTTGATTATGTGCCACCGAAGGTCGTTAGTTTGTTCATCACAGATACTGGTGGGCATAATCCTTCTTACATGTATCGGCTCATATCC GATTATTACTCGGCTGATGATCTAGTGGTGCAAAGAAGTCATGCTGCAGGGAACTGA
AA sequence Show only first row Show all	>Lus10016349 pacid=23161892 polypeptide=Lus10016349 locus=Lus10016349.g ID=Lus10016349.BGIv1.0 annot-version=v1.0 MPDVQAFVNDFLSKLKKRKIEGSQATAKLTAEILRSVISQQRVPHTNQAGALIDAVAAIGRQLMAANPVELAVGNIVRRVINIIREEDLSLTTAAVGELN LSTASDDDNDLDHDDHPLLSAAAAAAESRSTLRPPSLQLLLEGAPDSVAVPQPASSGGDSEEKSKSHDKNSSTRKLKHDVIESVNELIQDITTCHELIAE QAVEHIHHNEVILTLGSSKTVFEFLCAAKEKKRSFRVFVAEGAPRYQGHQLAKELVARGLQTTLIADSAVFAIISRVNKVIVGAHAVMSNGGVIAPVGMN MVALAAQKHAVPFVVLAGSHKLCPSYPHNPEVTLNELRSPSELLDFGEFSDCLDYGIGNNGSPLLHVVNPTFDYVPPKVVSLFITDTGGHNPSYMYRLIS DYYSADDLVVQRSHAAGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07300			NagB/RpiA/CoA transferase-like...		Lus10016349 [exp]	0	1
AT2G44880			Pentatricopeptide repeat (PPR-...		Lus10003422 [exp]	2.4	0.7774
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10007866 [exp]	6.9	0.6998
AT5G64600			O-fucosyltransferase family pr...		Lus10020882 [exp]	7.1	0.7419
AT4G19900			alpha 1,4-glycosyltransferase ...		Lus10017137 [exp]	14.9	0.6776
AT3G07300			NagB/RpiA/CoA transferase-like...		Lus10002762 [exp]	16.6	0.7267
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Lus10024952 [exp]	17.2	0.7306
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10041056 [exp]	17.7	0.7530
AT5G21160			LA RNA-binding protein (.1.2.3...		Lus10037431 [exp]	18.5	0.7206
AT2G33760			Pentatricopeptide repeat (PPR)...		Lus10025490 [exp]	20.1	0.6517
AT4G15520			tRNA/rRNA methyltransferase (S...		Lus10012771 [exp]	21.2	0.6510

Compare expression of checked genes

Lus10016349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.