Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26870 56 / 1e-10 Plant self-incompatibility protein S1 family (.1) AT3G27680 55 / 3e-10 Plant self-incompatibility protein S1 family (.1) AT2G06090 55 / 3e-10 Plant self-incompatibility protein S1 family (.1) AT4G16295 54 / 1e-09 SPH1 S-protein homologue 1 (.1) AT4G29035 51 / 1e-08 Plant self-incompatibility protein S1 family (.1) AT5G27238 49 / 4e-08 Plant self-incompatibility protein S1 family (.1) AT5G26060 47 / 6e-07 Plant self-incompatibility protein S1 family (.1) AT4G08560 47 / 1e-06 APUM15 pumilio 15 (.1) AT1G28306 45 / 1e-06 Plant self-incompatibility protein S1 family (.1) AT5G04350 45 / 2e-06 Plant self-incompatibility protein S1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019779 [exp] 134 / 3e-40 AT4G16295 58 / 6e-11 S-protein homologue 1 (.1) Lus10016351 [exp] 132 / 7e-40 AT4G16295 57 / 1e-10 S-protein homologue 1 (.1) Lus10039546 [exp] 122 / 5e-36 AT4G16295 56 / 3e-10 S-protein homologue 1 (.1) Lus10022826 [exp] 94 / 3e-25 AT4G29035 68 / 5e-15 Plant self-incompatibility protein S1 family (.1) Lus10011897 [exp] 94 / 3e-25 AT2G06090 73 / 2e-17 Plant self-incompatibility protein S1 family (.1) Lus10000682 [exp] 94 / 7e-25 AT4G16295 56 / 4e-10 S-protein homologue 1 (.1) Lus10000683 [exp] 91 / 8e-24 AT4G16295 57 / 5e-11 S-protein homologue 1 (.1) Lus10011892 [exp] 91 / 1e-23 AT4G16295 71 / 3e-16 S-protein homologue 1 (.1) Lus10022830 [exp] 90 / 2e-23 AT2G06090 67 / 6e-15 Plant self-incompatibility protein S1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066900 [exp] 70 / 7e-16 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 67 / 2e-14 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.003G201300 [exp] 62 / 1e-12 AT2G06090 65 / 5e-14 Plant self-incompatibility protein S1 family (.1) Potri.004G199801 [exp] 60 / 9e-12 AT4G16295 67 / 2e-14 S-protein homologue 1 (.1) Potri.004G199700 [exp] 57 / 8e-11 AT4G16295 69 / 2e-15 S-protein homologue 1 (.1) Potri.010G008300 [exp] 50 / 3e-08 AT3G17080 74 / 8e-18 Plant self-incompatibility protein S1 family (.1) Potri.018G148366 [exp] 47 / 3e-07 AT1G04645 103 / 1e-29 Plant self-incompatibility protein S1 family (.1) Potri.006G170200 [exp] 47 / 4e-07 AT5G12060 48 / 1e-07 Plant self-incompatibility protein S1 family (.1) Potri.018G148630 [exp] 44 / 6e-06 AT1G04645 106 / 3e-30 Plant self-incompatibility protein S1 family (.1) Potri.003G175000 [exp] 42 / 3e-05 AT3G24060 46 / 7e-07 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10016350 pacid=23161878 polypeptide=Lus10016350 locus=Lus10016350.g ID=Lus10016350.BGIv1.0 annot-version=v1.0 ATGAAGGCCACATTGCTGCCAACTCTTCTGGCTGTCGTCGCCGCAGCTCTAGTTTTGGTCGGAACTACTTCGACGTCTGCTTTTAGCTTATGGCCGTACA AGCACGTCCATGTAATCAACGAGCTGAACAAATCATGGAGGCATCTCTTCCTCCAGTGCTGGTCCAAGGACGACGACCTCGGGAATCACGAAGTCCCGGT CGGGCAAGAGTACACGTGGCGCTTTAAGCCCAGCTTGTTGGGCAACACCAAGTGGACATGCAACATCAAGTTGAACGACGGCAGGCATGCGCAGTGGGAC TCGTATTGGGAAGATTTGAGCGAAGGAAAGAGAGAGTATAAGGAAAATATTTACTGGGTTGCGGAAGAGGACGGTGTTTATCTCAGATATAAGAAGGAGA ACAGAGACGAATTTTATGCTAAGTGGCTTACTAATTAA
AA sequence Show only first row Show all	>Lus10016350 pacid=23161878 polypeptide=Lus10016350 locus=Lus10016350.g ID=Lus10016350.BGIv1.0 annot-version=v1.0 MKATLLPTLLAVVAAALVLVGTTSTSAFSLWPYKHVHVINELNKSWRHLFLQCWSKDDDLGNHEVPVGQEYTWRFKPSLLGNTKWTCNIKLNDGRHAQWD SYWEDLSEGKREYKENIYWVAEEDGVYLRYKKENRDEFYAKWLTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G06090			Plant self-incompatibility pro...		Lus10016350 [exp]	0	1
AT5G10990			SAUR-like auxin-responsive pro...		Lus10042374 [exp]	1.0	0.8291
AT2G19800		MIOX2	myo-inositol oxygenase 2 (.1)		Lus10006198 [exp]	3.7	0.7579
AT1G44835			YbaK/aminoacyl-tRNA synthetase...		Lus10025613 [exp]	14.1	0.7244
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10037500 [exp]	19.5	0.7461
AT4G34760			SAUR-like auxin-responsive pro...		Lus10026296 [exp]	21.4	0.6976
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10023537 [exp]	22.6	0.7270
AT5G14400		CYP724A1	"cytochrome P450, family 724, ...		Lus10022298 [exp]	23.5	0.6750
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10040134 [exp]	24.0	0.6918
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10026681 [exp]	28.8	0.7516
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10031551 [exp]	37.6	0.7229

Compare expression of checked genes

Lus10016350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.