Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16295 56 / 4e-10 SPH1 S-protein homologue 1 (.1) AT4G29035 54 / 2e-09 Plant self-incompatibility protein S1 family (.1) AT5G04350 47 / 6e-07 Plant self-incompatibility protein S1 family (.1) AT3G27680 43 / 2e-05 Plant self-incompatibility protein S1 family (.1) AT5G27238 40 / 0.0001 Plant self-incompatibility protein S1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019779 [exp] 264 / 6e-91 AT4G16295 58 / 6e-11 S-protein homologue 1 (.1) Lus10039546 [exp] 184 / 6e-60 AT4G16295 56 / 3e-10 S-protein homologue 1 (.1) Lus10016350 [exp] 129 / 2e-38 AT2G06090 59 / 1e-11 Plant self-incompatibility protein S1 family (.1) Lus10000682 [exp] 91 / 4e-23 AT4G16295 56 / 4e-10 S-protein homologue 1 (.1) Lus10011897 [exp] 89 / 7e-23 AT2G06090 73 / 2e-17 Plant self-incompatibility protein S1 family (.1) Lus10000683 [exp] 89 / 2e-22 AT4G16295 57 / 5e-11 S-protein homologue 1 (.1) Lus10021633 [exp] 86 / 3e-21 AT4G29035 57 / 4e-11 Plant self-incompatibility protein S1 family (.1) Lus10021634 [exp] 86 / 4e-21 AT4G29035 58 / 4e-11 Plant self-incompatibility protein S1 family (.1) Lus10022826 [exp] 84 / 8e-21 AT4G29035 68 / 5e-15 Plant self-incompatibility protein S1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066900 [exp] 75 / 3e-17 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 67 / 2e-14 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.004G199801 [exp] 60 / 2e-11 AT4G16295 67 / 2e-14 S-protein homologue 1 (.1) Potri.010G008300 [exp] 54 / 2e-09 AT3G17080 74 / 8e-18 Plant self-incompatibility protein S1 family (.1) Potri.003G201300 [exp] 49 / 1e-07 AT2G06090 65 / 5e-14 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10016351 pacid=23161901 polypeptide=Lus10016351 locus=Lus10016351.g ID=Lus10016351.BGIv1.0 annot-version=v1.0 ATGAGGTGTTCGTCGACCACCGTGGCCGCCTTCTTACCATTCGTCCTCAGCCTCCTCCTGGCGGGGGCCACAGCCTCCTTAACGGCGCTGAACCTGAGGG GCCCACTCCGCGCATATAAACAAGTCCACGTCCTCAACGAGCTGACTGGGAACAAGATGATCCACGTGCATTGCCACTCAAGGGACGGCGGGGAAACGGG GAACCACGACGTGGCGGTGGGGACGGAGTACATGTGGAGGTTCAGGCCCAACCCGCTGGGGTCCACTAGGTGGTCGTGTGACGTCATGACGAGCGACAAC CGCAGGGCCACTTTCGACTCGTACTGGGAGGACGTGGCGATGACTAGGAGAGAGTATAGAGGGAACACTTACTGGGTTGCTGAAGAGGACGGTGTTTATC TTAGGCCGATTCAGAGAAATAGAGATGAGATTCATGCCGTGTGGGTGCCTACGATGCCTGTGTCGGCGCCAGCTGTACCTGCCCCTCCTGTGACTGTGTC TGCTCCTCCTCCACCTGCTCCTGCTGCTGGTGCTGGCGCGTCGTCCGATGAACATCCTTAA
AA sequence Show only first row Show all	>Lus10016351 pacid=23161901 polypeptide=Lus10016351 locus=Lus10016351.g ID=Lus10016351.BGIv1.0 annot-version=v1.0 MRCSSTTVAAFLPFVLSLLLAGATASLTALNLRGPLRAYKQVHVLNELTGNKMIHVHCHSRDGGETGNHDVAVGTEYMWRFRPNPLGSTRWSCDVMTSDN RRATFDSYWEDVAMTRREYRGNTYWVAEEDGVYLRPIQRNRDEIHAVWVPTMPVSAPAVPAPPVTVSAPPPPAPAAGAGASSDEHP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10016351 [exp]	0	1
AT4G27790			Calcium-binding EF hand family...		Lus10022381 [exp]	7.3	0.8143
AT1G23540		IGI1, AtPERK12	proline-rich extensin-like rec...		Lus10030610 [exp]	18.0	0.7719
AT3G19290	bZIP	AREB2, ABF4	ABA-RESPONSIVE ELEMENT BINDING...		Lus10002399 [exp]	20.0	0.7788
AT4G02210			unknown protein		Lus10027531 [exp]	48.0	0.7339
					Lus10000768 [exp]	48.9	0.7426
AT5G19950			Domain of unknown function (DU...		Lus10000162 [exp]	57.2	0.7441
AT1G43670		FINS1, AtcFBP	FRUCTOSE INSENSITIVE 1, Arabid...		Lus10018885 [exp]	70.2	0.7552
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10011523 [exp]	73.2	0.7364
AT4G30780			unknown protein		Lus10035819 [exp]	81.0	0.7454
AT4G09760			Protein kinase superfamily pro...		Lus10028728 [exp]	113.1	0.7229

Compare expression of checked genes

Lus10016351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.