Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38770 2350 / 0 EMB2765 EMBRYO DEFECTIVE 2765, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47010 120 / 7e-27 ATUPF1, UPF1, LBA1 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) AT4G30100 98 / 3e-20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 96 / 1e-19 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G16800 96 / 3e-19 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03270 91 / 4e-18 DNA-binding protein, putative (.1) AT1G65810 86 / 2e-16 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G52090 77 / 8e-14 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G35970 76 / 3e-13 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37150 75 / 4e-13 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019778 [exp] 3038 / 0 AT2G38770 2444 / 0.0 EMBRYO DEFECTIVE 2765, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011054 [exp] 117 / 5e-26 AT5G47010 1977 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10003024 [exp] 117 / 6e-26 AT5G47010 2045 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10035717 [exp] 100 / 2e-20 AT1G16800 1196 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10042360 [exp] 96 / 7e-20 AT2G03270 613 / 0.0 DNA-binding protein, putative (.1) Lus10037303 [exp] 97 / 9e-20 AT1G16800 1190 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033462 [exp] 94 / 9e-19 AT4G30100 1589 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10026309 [exp] 93 / 1e-18 AT2G03270 1085 / 0.0 DNA-binding protein, putative (.1) Lus10035776 [exp] 84 / 1e-15 AT1G65810 633 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G201200 [exp] 2514 / 0 AT2G38770 2323 / 0.0 EMBRYO DEFECTIVE 2765, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G148100 [exp] 118 / 2e-26 AT5G47010 2008 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.003G086400 [exp] 117 / 6e-26 AT5G47010 2042 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.001G024401 [exp] 97 / 2e-23 AT2G38770 89 / 7e-22 EMBRYO DEFECTIVE 2765, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G093500 [exp] 98 / 5e-20 AT4G30100 1637 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G168300 [exp] 94 / 1e-18 AT4G30100 1620 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G054600 [exp] 90 / 5e-18 AT2G03270 1058 / 0.0 DNA-binding protein, putative (.1) Potri.010G253700 [exp] 91 / 8e-18 AT1G16800 1405 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G077600 [exp] 84 / 8e-16 AT1G65810 843 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077500 [exp] 84 / 8e-16 AT1G65810 827 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016352 pacid=23161827 polypeptide=Lus10016352 locus=Lus10016352.g ID=Lus10016352.BGIv1.0 annot-version=v1.0 ATGACTAAGGTCTACGGCACCGGCGCCTACGACTTCAAGCGCCACCATGTGGCGGAGTACCCGACGGCGGAGCTCCCCAACCAGCTCGCCGACAAGCCAG TCGAGTCCAAGCCCGGAGCTTCTCTCCCGAGCTCCATTACCCTCGCCGAGATACAGCGGGACCGCCTCACCAAGATTGCCGCCGCGAACTGGCTCAAGTC CAGTGGTGGTGCCGTTGCTGGCTCGGAGGAGGAGAAGCAGGTAGGGTTTGATGCCGGGCTGGTGAGGAAGATATACGATACTGAGCTGAAGGTCACTGAA GGCACGAGGAAGCCTGTGCCCTTGCAGAGGGTGATGATTTTGGAGGTCAGTCAGTATTTGGAGAACTACCTCTGGCCGAATTTCGATCCGGAGACCGCTA CTTTTGAGCACGTTATGTCTATGATTCTCATGGTCAATGAGAAGTTCCGTGAGAATGTGGCGGCTTGGCTATGCTTCTATGACCGTAAAAAGGCGTTTGA GGGATTTCTCAAGAGGGTTATACGGTTGAAGGAGGGAAGAGATATGAGCATTGCAGAAAAGATAAACTATCTAGTTTTTATGATTAATGCCTTCCAGAGT TTGGAAGATGACATCGTCAGTAAAACAGTCCTAAGACTAGCTAGCCTGCAGTCATGGCACAGTTTGTCATATGGACGATTTCAGATGGAGCTATGTACAA ACCCGGATTTGATCAAGAAATGGAAAAGGACGGTAAAGAAAGATGCCAAGGAGGCAGAAAAGCGAGGAGACACTTATAAGCCTTTAGATTCAGTTGAAGT GAAGTTCTCAAGAAATCTTATTGAAGAGTTTCTTGATGTGCTTAGTTCCAAGGTTTTTCCAGCAAATGATGCTGACATTGAAGACGATGGACTCGGTATT GGGCAGGAACAAATCGACGATGCGGCAGTACTTTACTGTGAGAGGTTTATGGAATTTCTTATTGACTTGCTGAGCCAACTTCCAACAAGGAGGTATCTTA GGCCTCTAGTTGCTGATGTTGCTATAGTCTCAAAATGCCATTTGAGTGTCCTTTACAGACACGAAAAGGGGAAGCTCTTTGCTCAACTGGTTGACTTGCT CCAGTTTTATGAGAGGTTTGAGATAAACGATCATCTTGGGACGCAATTGACTGATGATGAAGTTCTCCAAGCTCACTATGACCGCTTTTATGCTTTCCAG CTTCTTGCTTTTAAACAGATACCTAAGTTGCGAGATCTTGCATTGTGCAACATTGGTTCAGTTAACAAACGGGCTGATTTGTCCAAGAAGTTGTCTGTCC TTTCTTATGAGGAGCTGAAAGACTTGGTTTGCCAAAAGCTCAAACTTGTATCTCACGAAGATCCTTGGTCTGCAAGCTCTGACTTCCTTATTGAAGTGAT GGTCTCATATTTTGAGAAACAACAGTCCCAGAAGGAATCTATAAATGCTCTTCCTCTCTACCCAAATGAACAAATTATGTGGGATGAGAGTGTTGTGCCA AGCATCAATTACTCCGGAGAGGGGTGTCTTGCTCTCCCAAAGCTGAATCTACAATTTTTGACGCTGCATGATTATCTTTTGAGAAATTTTAATCTCTTCC GTCTTGAATCAACTTATGAGATCCGCGAAGATATTCAGGAAGCAGTACCTCACCTTCTTCCGTATATCAACAATGAGGGAGACACTGCTTTCCGAGGCTG GTCAAGAATGGCTGTGCCAATTAGAGATTTTAGGATCAGTGAGGTCAAACAGCCAAATATTGGTGAAGTCAAGCCTTCTTCTGTAACAGCACAAGTGACT TACAGCATTTCCAGCTATAGATCTAATATTCGATCCGAGTGGGATTCCCTAAAAGAGCATGATGTTCTGTTTTTGCTTTCTATTCGGCCTTCATTTGAAC CTCTAAGTGCTGAAGAAGCTGAAAAGGCAAGTGTTCCGCAGAGGCTTGGGCTCCAGTATGTACGGGGTTGTGAAGTTATTGAGATCCGAGATGAGCCAGG AATGCTTATGAATGATTTTACTGGAAGAATCAAACGAGATGAGTGGAAACCACCTAAAGGAGAACTAAGAACAGTCACTGTGGCCTTAGATACGGCCCAG TACCATATGGATGCAGCTGGCATTGCTGAAAAAGGCGCAGAAGATGTGTATGGGGCATTTAATGTATTGATGAGGAGGAAACCAAAGGAAAACAACTTCA AAGCTATTTTGGAATCTATCAGAGATCTTATGAATGAATACTGTATTGTACCTGACTGGCTGCATAACGTATTTCTGGGTTATGGGAACCCGTCTGCTGC ACAATGGACCAATATGCCGGACCTTCTTGAAACTGTGGATTTCAAGGACACCTTCTTAGATGCAGAACACGTGAAGGAGAGTTTTCCAGATTATCAGGTT TGTTTTGTCAATCAAGAAGGTGTGGAGAGTCCGGATCCAAGACCTCCTTTTCGAATTAGACTTCCTAGAAATTTGAAGGGAAACCCTCTTGCACTTCCGG GTAACAAGAAAGCCACTATTGAATCATTGGATGAGGTCAAGATGGCAGATGCAACGAATGAGAAAGAAAGACTCATTGTTGAGACATATATTCCGCCTGA TCCAGGGCCTTATCCCCAGGATCAGCCTAAGCAGAATTCAGTTAGATTTACAGCCACACAGGTTGGAGCAATTATTTCTGGTATACAGCCGGGTCTCACT ATGGTTGTAGGGCCACCTGGAACTGGAAAAACTGATACAGCTGTGCAAATTTTGAATGCAATCTATCATAATTGCCCGTCCCAGAGGACATTGATAATCA CTCATTCGAATCAGGCTCTTAATGACCTCTTTGAGAAGATAATGCAGAGAGATGTCCCTGCAAGGTATCTTCTGCGACTGGGTCAAGGAGAGCAAGAGCT TGCTACTGACCTTGACTTCAGCAGGCAAGGTCGTGTGAATTCCATGCTTGTTCGGCGGTTAGAACTGCTTAGTGAGGTGGAAAGGCTTGCAAGGTCTCTT CAGCTTCCAGAGGATGTAGGCTACACGTGTGAGACTGCTGGATATTTTTGGTTGCTTCATGTGTATTCTCGCTGGGAGCTATTCCTTGCTGCTTGCGCAG ATAATAAAGACAAACCAACTTTTGTCCAGGATAGATTTCCCTTTAAGGAATTCTTCTCAAACACCCCTCAGCCAGTGTTTACCGGGCAGTCATTTGAGAG GGACATGCGGGCAGCTAATGGTTGTTTCCGTCATCTTAAGACTGTGTTCCAAGAGCTAGAAGAGTGTCGAGCATTTGAGTTGCTGAAATCAACAGCTGAC AGAGCAAATTATCTCATGACAAAGCAGGCGAAAATAGTCGCTATGACTTGCACTCATGCGGCATTGAAGCGAAGGGATTTCCTTCAGCTAGGTTTCAAGT ATGACAACTTGTTAATGGAAGAAAGTGCCCAGATTTTGGAGATTGAAACCTTCATTCCAATGTTACTCCAGAGGCAGGAGGATGGTTATGCACGGCTTAA GCGTTGCATTCTTATAGGGGATCATCACCAGTTGCCTCCAGTTGTCAAGAACATGGCTTTCCAGAAATACAGTCACATGGACCAGAGCTTGTTTACAAGG TTCGTTCGACTGGGGATCCCTTATATTGAGCTTAATGCACAAGGTAGAGCCAGGCCAAGCATAGCTCAACTTTACAATTGGAGGTACAGGGATTTAGGAG ACCTTCCTTATGTAAAGGAGGATCCAGTATATCATAGAGCAAATTCAGGATTTTCATACGACTATCAGTTAATTGACGTTCCTGATTACCGCGGAAAGGG AGAGTCCGCACCATCTCCTTGGTTCTATCAAAACGAGGGAGAGGCTGAATATATTGTCAGTGTCTACATCTACATGCGTTTGCTTGGGTATCCTGCTAGT AAGATTTCCATCTTAACAACTTACAATGGCCAGAAACTTCTGATTCGGGATGTTATCAACAGACGATGTGTTCCATATGATTTCATCGGCCCACCCAGCA AGGTAGCGACAGTTGATAAATTCCAGGGACAGCAAAACGATTTTATCCTGCTCTCGCTTGTCCGAACTCGGTTCGTGGGTCACCTCCGTGATGTTAGAAG ACTAATTGTCGCAATGTCTCGTGCTCGTCTTGGTCTATATGTGTTCTGCCGTCGATCACTTTTCGAACAATGTTATGAGCTGCAGCCTACATTCCAAGCA CTCCTTAAGCGCCCTGACCACCTGGACCTGAATCTGCACGAGACTTCGTCATACACAGAGCGTCCAGTTGAAAACATCGGGCAACCTTACCCGGTAAGCG GAGTTGACGAGATGGGTCAAATTGTTATCGACAAAATAAATCAGCTCTATCAGGAAAGAACAACGAGCTACCAGTTCCAGCAACATATGGCTTACACATC CACCGCACCGAATAGTGCCGAACTAGATATGCCTGATGGCGATGGTCCGGTTCAGAATGGTGCTGAACAAGATATGCCTGATGGCCATCTTCCAGTAGAA GCAACGGACACGGATGCCATGGTAACTGATCAAAACCAGGACCTTGCTGATCTTGGCCAATCAGAAGAAGCGACGGAAATGGACGTTGCTGCCGGCAATC AGAACGGAGACGTAGCTAGCAAGAGTCAGTCGGATGGCCAAGCTGATGGAGAAACAAGAATGGAGGAGTGA
AA sequence Show only first row Show all	>Lus10016352 pacid=23161827 polypeptide=Lus10016352 locus=Lus10016352.g ID=Lus10016352.BGIv1.0 annot-version=v1.0 MTKVYGTGAYDFKRHHVAEYPTAELPNQLADKPVESKPGASLPSSITLAEIQRDRLTKIAAANWLKSSGGAVAGSEEEKQVGFDAGLVRKIYDTELKVTE GTRKPVPLQRVMILEVSQYLENYLWPNFDPETATFEHVMSMILMVNEKFRENVAAWLCFYDRKKAFEGFLKRVIRLKEGRDMSIAEKINYLVFMINAFQS LEDDIVSKTVLRLASLQSWHSLSYGRFQMELCTNPDLIKKWKRTVKKDAKEAEKRGDTYKPLDSVEVKFSRNLIEEFLDVLSSKVFPANDADIEDDGLGI GQEQIDDAAVLYCERFMEFLIDLLSQLPTRRYLRPLVADVAIVSKCHLSVLYRHEKGKLFAQLVDLLQFYERFEINDHLGTQLTDDEVLQAHYDRFYAFQ LLAFKQIPKLRDLALCNIGSVNKRADLSKKLSVLSYEELKDLVCQKLKLVSHEDPWSASSDFLIEVMVSYFEKQQSQKESINALPLYPNEQIMWDESVVP SINYSGEGCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIREDIQEAVPHLLPYINNEGDTAFRGWSRMAVPIRDFRISEVKQPNIGEVKPSSVTAQVT YSISSYRSNIRSEWDSLKEHDVLFLLSIRPSFEPLSAEEAEKASVPQRLGLQYVRGCEVIEIRDEPGMLMNDFTGRIKRDEWKPPKGELRTVTVALDTAQ YHMDAAGIAEKGAEDVYGAFNVLMRRKPKENNFKAILESIRDLMNEYCIVPDWLHNVFLGYGNPSAAQWTNMPDLLETVDFKDTFLDAEHVKESFPDYQV CFVNQEGVESPDPRPPFRIRLPRNLKGNPLALPGNKKATIESLDEVKMADATNEKERLIVETYIPPDPGPYPQDQPKQNSVRFTATQVGAIISGIQPGLT MVVGPPGTGKTDTAVQILNAIYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPARYLLRLGQGEQELATDLDFSRQGRVNSMLVRRLELLSEVERLARSL QLPEDVGYTCETAGYFWLLHVYSRWELFLAACADNKDKPTFVQDRFPFKEFFSNTPQPVFTGQSFERDMRAANGCFRHLKTVFQELEECRAFELLKSTAD RANYLMTKQAKIVAMTCTHAALKRRDFLQLGFKYDNLLMEESAQILEIETFIPMLLQRQEDGYARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTR FVRLGIPYIELNAQGRARPSIAQLYNWRYRDLGDLPYVKEDPVYHRANSGFSYDYQLIDVPDYRGKGESAPSPWFYQNEGEAEYIVSVYIYMRLLGYPAS KISILTTYNGQKLLIRDVINRRCVPYDFIGPPSKVATVDKFQGQQNDFILLSLVRTRFVGHLRDVRRLIVAMSRARLGLYVFCRRSLFEQCYELQPTFQA LLKRPDHLDLNLHETSSYTERPVENIGQPYPVSGVDEMGQIVIDKINQLYQERTTSYQFQQHMAYTSTAPNSAELDMPDGDGPVQNGAEQDMPDGHLPVE ATDTDAMVTDQNQDLADLGQSEEATEMDVAAGNQNGDVASKSQSDGQADGETRMEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10016352 [exp]	0	1
AT1G79150			binding (.1)		Lus10029032 [exp]	1.0	0.9625
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10019032 [exp]	2.8	0.9598
AT3G55160			unknown protein		Lus10007252 [exp]	4.5	0.9501
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10027934 [exp]	4.9	0.9569
AT5G42950			GYF domain-containing protein ...		Lus10032720 [exp]	5.5	0.9582
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10004531 [exp]	5.5	0.9547
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Lus10007498 [exp]	6.5	0.9538
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10028113 [exp]	6.7	0.9510
AT3G05380	MYB	ALY2, ATALY2	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10029910 [exp]	7.3	0.9237
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10040049 [exp]	8.5	0.9427

Compare expression of checked genes

Lus10016352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.