Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 177 / 1e-50 HXXXD-type acyl-transferase family protein (.1) AT1G24420 169 / 2e-47 HXXXD-type acyl-transferase family protein (.1) AT3G30280 164 / 7e-46 HXXXD-type acyl-transferase family protein (.1) AT5G47950 157 / 2e-43 HXXXD-type acyl-transferase family protein (.1) AT4G15390 157 / 4e-43 HXXXD-type acyl-transferase family protein (.1) AT1G24430 154 / 4e-42 HXXXD-type acyl-transferase family protein (.1) AT5G23970 135 / 5e-35 HXXXD-type acyl-transferase family protein (.1) AT5G47980 117 / 8e-29 HXXXD-type acyl-transferase family protein (.1) AT4G15400 107 / 3e-25 HXXXD-type acyl-transferase family protein (.1) AT1G03390 66 / 2e-11 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042994 [exp] 492 / 6e-173 AT3G26040 184 / 3e-53 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 378 / 7e-128 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10002893 [exp] 377 / 2e-127 AT5G47950 195 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10000319 [exp] 357 / 1e-119 AT3G26040 198 / 2e-58 HXXXD-type acyl-transferase family protein (.1) Lus10012759 [exp] 335 / 5e-111 AT3G26040 209 / 3e-62 HXXXD-type acyl-transferase family protein (.1) Lus10001107 [exp] 238 / 1e-73 AT3G26040 193 / 2e-56 HXXXD-type acyl-transferase family protein (.1) Lus10036126 [exp] 234 / 1e-71 AT3G26040 189 / 6e-55 HXXXD-type acyl-transferase family protein (.1) Lus10025867 [exp] 229 / 2e-71 AT3G26040 155 / 2e-43 HXXXD-type acyl-transferase family protein (.1) Lus10036043 [exp] 230 / 3e-70 AT3G26040 205 / 4e-61 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G124184 [exp] 262 / 9e-83 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 262 / 9e-83 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 261 / 2e-82 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 259 / 8e-82 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 256 / 1e-80 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 256 / 1e-80 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 220 / 2e-66 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 215 / 5e-65 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 211 / 4e-63 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.002G010700 [exp] 203 / 3e-60 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10016353 pacid=23161903 polypeptide=Lus10016353 locus=Lus10016353.g ID=Lus10016353.BGIv1.0 annot-version=v1.0 ATGGAGGTGTCGATCATGTCAGTGGATAGCATCAAGCCCTTCTCTGCAACCAGTGATCTTAAGCCGTTTTATCTGAGTCTTCTTGACCAGATTATGCCCA GCTGTTACACTCCTCTCATCCACTTCTATCCGAACCATAATCTTCGTTACGATCACAAGTCACTTGCTCGTAAGCTCAAATCCTCCCTCTCGAAAACACT CAACCCATTTTACCCGCTATCCGGACGGGTTAACGAGATGAACACCATCGTCCACAACTTCCATCGAGGTGTACCATTCGTGGAAACTCGCATCCGTGGC CGACACCTCGTCGATTTCTTGCGACCACCAAAAGTGGAACTCCTCCATACCCTGCTCCCCTTCGAGCCTTTCTCAGTTGGCGACCCAACAGATGATCCTC CTCAGGTTGCTGTGCAGGTCAACACATTTGACTGCGGCGGGATTGCTGTTGGTTTGAGCTTGAACCACAAAATCATAGATGGTCAGACTCTCGGCACATT CCTCAAGACATGGGCTGCATACTCAATTAATCCTAACGCAGAAGCTTCTTTCTACCCTCTGGATTTAGTCGGCGGATCCTCTGTTTTCCCACCTCGACCT CCCCATGATGAATCCTTGCCAGCCAGCAGCAGCAACAACAACTTGTTGGAAATGAGCACAAGGAGATTCGTGTTCTATAACAATTCCATATCAGCATTGA GATCTAGCAGCAGGAGTCCTCTAGCTGAGCATCCAACTCGAGTCGAAGCTCTATATGCTTTTATTTGGAAGCACGGGATGCGGGCTGCATCTGCTGTTTC AGGATCTCCCAAACTCCAGAGTCTAGCACAACCGATTAATATGAGGTCGTCAATGGATGCACGTTTGTCCCAACGCTCCATTGGGAATCTGTTGTACCCA CTGATAGTTTCTTGTAAAGACAGCAACAGCGAAAAGGATCTGGTGGCCGCTATGAGAAAGGGTATTACGGCAATTGACCGAGAACGCGATTTCAATTCCA CCTCCGTTGTACAGCAGTTTACAGCAAGTGCAGCAATCGCGAGTGGCGGTGACCAACCGCAGCTTCTGGGTTGTTCAAGCTGGACAGGATTTGGGTTCAA CGATTTTGAATTCGGGATCGGAAAGCCCATCTGGACTGCTATGGCTGGACCGACTAATGGGAATATTAACAATGCTTCGGCCAGAAGTTGCTTTGTTGTT CTAAAGGAAGCGGGTGCAAGAAGAAGTGGCAATAATGACGGAATTGAGGCATGGATAACTCTTCCTCAGGTCATCATGGCTGCTCTTGAAATCGATCCTG AATTTTTGGAATTTGCTTCTCTCAACCCCCCTATCCCTTTTTAA
AA sequence Show only first row Show all	>Lus10016353 pacid=23161903 polypeptide=Lus10016353 locus=Lus10016353.g ID=Lus10016353.BGIv1.0 annot-version=v1.0 MEVSIMSVDSIKPFSATSDLKPFYLSLLDQIMPSCYTPLIHFYPNHNLRYDHKSLARKLKSSLSKTLNPFYPLSGRVNEMNTIVHNFHRGVPFVETRIRG RHLVDFLRPPKVELLHTLLPFEPFSVGDPTDDPPQVAVQVNTFDCGGIAVGLSLNHKIIDGQTLGTFLKTWAAYSINPNAEASFYPLDLVGGSSVFPPRP PHDESLPASSSNNNLLEMSTRRFVFYNNSISALRSSSRSPLAEHPTRVEALYAFIWKHGMRAASAVSGSPKLQSLAQPINMRSSMDARLSQRSIGNLLYP LIVSCKDSNSEKDLVAAMRKGITAIDRERDFNSTSVVQQFTASAAIASGGDQPQLLGCSSWTGFGFNDFEFGIGKPIWTAMAGPTNGNINNASARSCFVV LKEAGARRSGNNDGIEAWITLPQVIMAALEIDPEFLEFASLNPPIPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10016353 [exp]	0	1
AT5G05340			Peroxidase superfamily protein...		Lus10006534 [exp]	2.0	0.8506
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10010920 [exp]	4.2	0.8044
AT2G43870			Pectin lyase-like superfamily ...		Lus10002123 [exp]	4.5	0.8366
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10012478 [exp]	5.7	0.8366
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Lus10034332 [exp]	15.6	0.7792
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10032857 [exp]	16.2	0.8443
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10017278 [exp]	17.5	0.7213
AT3G62270			HCO3- transporter family (.1)		Lus10009995 [exp]	17.6	0.8215
AT3G25640			Protein of unknown function, D...		Lus10019166 [exp]	29.8	0.8000
AT5G35370			S-locus lectin protein kinase ...		Lus10025617 [exp]	37.9	0.8148

Compare expression of checked genes

Lus10016353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.