Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38780 342 / 6e-114 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019776 [exp] 691 / 0 AT2G38780 368 / 7e-124 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G024200 [exp] 367 / 1e-123 AT2G38780 399 / 7e-136 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016355 pacid=23161816 polypeptide=Lus10016355 locus=Lus10016355.g ID=Lus10016355.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTCTCCACCTTCACCACTTCAAACACTCGTCCTTCACTTATTCATCTCCTTCCCCTGCTCCTCCTCCGCCCCTCTCCGCCGCCGTCGCCT TCTTCCCCTCCAAGTCCTCTCCCTTCAGACACTCGATTTCCGCTGCCCCTCTCAATAATGCATCATCAGAGGAAGAAGAACCCCCCGTCGACCGAGTGAG ACTCGCTTTCGAGAAGGCCAAAGCGTACAAACAGAAGAAAGCTGAATTGGCAGCTGGTCAGAATGCTGCGGCTACTACTAGTACCACCCCTGTTCAGGAG GAAGTTCCCGATCGTGTTAAGGCTGCTCTTGAGAAAGCCACGGAGTACAAGCAGAATAAAGGGATCCCAGGTGCAGTGCAAGTTGTGGACTTTCTTTCTT TAGGAGTAAAGGTGCGCAATGTGAAGGATCCGGCACTTTCCAAGATTGATTTCGTGGGGCTTGATTTTGGGGACAGGAAAACGGGGAACAGGGTTCCTGC TGGGTTGATGCCTACAGTTGATCTTTACCCAGTAGGGGAGTTGCCTGAGGTGGAGATTATTGTTGGTGATCCTACCAAGTTTACCAAGGACAGGAAACAA GTGAATGATCAGCCATTGGAAGAAGACAAAGAAGAAGGCAATGATAAAGAGCTTTATAAGCCTAGGGTTTCCACTTGGGGGGTGTATCCCAGGCCTGCAA ATATTTCCAAAGCGTATGGTGGTGGGAAGACGATTCGCCCCGGGGATGCACTAGAATCAGAAGAGGAAAGAGAGAAAAAGGAAACACGCACAAAGCAATT GGTTGCAGCATATAGGAACAGAATCGGCGTAAATATTGATCCAAAGTTGAAATCCGAATGCCAGAAGATCTTGGATGACGGGGACTCTTTGATGGACTCT GGGAATCTCAAAGGAGCAATAACCCTCTATCAAGAGGTGATGGATAAACTACCTTATGCGAGTGAAATTCATGGATTAGCTGCTTTGCAATGGGGTATCT GTCAGGATTCACTTCTTAGGTCGGGTGAGGCTCGATCTATGTACGACAAACTTCGGTCTCATCCAGTTCCTAAAGTAAGCAAGAGAGCGAGGCAATTCGC GTTCAGTTTCCAGGCCATGGAAATGATGAAGGTGACGAAGTCGAACTTCCCGGTAGAGGTCACCGGGTACAAGGACTACTTTGACGCATTTGTCGAAGAT AAGGCAGCAAAGTACACAGCGACAGAGGATGAATCTGAAGGTGTGATGAAGCAAGCTCTCCCGTATATATTCTTTCTGGTTTCTCCCATTTTTATAGTGC TTTTGATTGCTGTACAGGGAAAGGGTGTAAATTAG
AA sequence Show only first row Show all	>Lus10016355 pacid=23161816 polypeptide=Lus10016355 locus=Lus10016355.g ID=Lus10016355.BGIv1.0 annot-version=v1.0 MASSLHLHHFKHSSFTYSSPSPAPPPPLSAAVAFFPSKSSPFRHSISAAPLNNASSEEEEPPVDRVRLAFEKAKAYKQKKAELAAGQNAAATTSTTPVQE EVPDRVKAALEKATEYKQNKGIPGAVQVVDFLSLGVKVRNVKDPALSKIDFVGLDFGDRKTGNRVPAGLMPTVDLYPVGELPEVEIIVGDPTKFTKDRKQ VNDQPLEEDKEEGNDKELYKPRVSTWGVYPRPANISKAYGGGKTIRPGDALESEEEREKKETRTKQLVAAYRNRIGVNIDPKLKSECQKILDDGDSLMDS GNLKGAITLYQEVMDKLPYASEIHGLAALQWGICQDSLLRSGEARSMYDKLRSHPVPKVSKRARQFAFSFQAMEMMKVTKSNFPVEVTGYKDYFDAFVED KAAKYTATEDESEGVMKQALPYIFFLVSPIFIVLLIAVQGKGVN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38780			unknown protein		Lus10016355 [exp]	0	1
AT4G15545			unknown protein		Lus10012775 [exp]	7.3	0.7891
AT5G46420			16S rRNA processing protein Ri...		Lus10011969 [exp]	9.4	0.8345
AT3G07670			Rubisco methyltransferase fami...		Lus10016087 [exp]	30.2	0.7871
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10040657 [exp]	30.7	0.7742
AT3G16560			Protein phosphatase 2C family ...		Lus10004793 [exp]	43.4	0.7188
AT5G35630		ATGSL1, GLN2, G...	GLUTAMINE SYNTHETASE LIKE 1, g...		Lus10001115 [exp]	59.5	0.7739
AT2G33180			unknown protein		Lus10011764 [exp]	62.7	0.7664
AT1G11340			S-locus lectin protein kinase ...		Lus10024064 [exp]	83.6	0.7647
AT4G37300		MEE59	maternal effect embryo arrest ...		Lus10040706 [exp]	95.1	0.7472
AT2G17972			unknown protein		Lus10026591 [exp]	98.5	0.7570

Compare expression of checked genes

Lus10016355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.