Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50400 333 / 6e-106 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) AT4G24890 332 / 1e-105 ATPAP24, PAP24 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) AT1G13750 314 / 9e-99 Purple acid phosphatases superfamily protein (.1) AT1G13900 221 / 2e-63 Purple acid phosphatases superfamily protein (.1) AT2G03450 213 / 1e-60 PAP9, ATPAP9 purple acid phosphatase 9 (.1) AT3G20500 124 / 2e-30 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT5G34850 117 / 8e-28 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT3G52780 116 / 1e-27 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT2G27190 111 / 7e-26 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) AT3G52820 109 / 2e-25 ATPAP22, PAP22 purple acid phosphatase 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019771 [exp] 1093 / 0 AT5G50400 317 / 4e-100 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10039565 [exp] 969 / 0 AT5G50400 362 / 6e-117 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10019772 [exp] 941 / 0 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10024179 [exp] 859 / 0 AT5G50400 331 / 3e-105 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10012144 [exp] 319 / 1e-100 AT5G50400 885 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10036904 [exp] 317 / 9e-100 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10037079 [exp] 314 / 7e-99 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10037091 [exp] 223 / 4e-64 AT1G13900 899 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10004661 [exp] 212 / 4e-60 AT1G13900 860 / 0.0 Purple acid phosphatases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G202200 [exp] 913 / 0 AT5G50400 359 / 8e-116 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.001G023400 [exp] 887 / 0 AT5G50400 345 / 1e-110 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.012G097400 [exp] 340 / 1e-108 AT5G50400 947 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G158250 [exp] 326 / 2e-103 AT1G13750 967 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.015G095900 [exp] 324 / 1e-102 AT5G50400 838 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G158400 [exp] 308 / 1e-96 AT1G13750 962 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.008G096000 [exp] 289 / 3e-89 AT1G13750 927 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.010G160500 [exp] 222 / 7e-64 AT1G13900 903 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.001G423700 [exp] 134 / 9e-34 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.006G063700 [exp] 134 / 2e-33 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10016356 pacid=23161840 polypeptide=Lus10016356 locus=Lus10016356.g ID=Lus10016356.BGIv1.0 annot-version=v1.0 ATGAAGATTCTCATCCTCCTCGTGATCATTACCTTGCATCCCACGGTAGCTAAGTCTTCAGTACCGGAGGAGCATCGGATTATCTCGCCCTCAAATGTAT TGAACAGAAGGTCTCTGCTTCAATGCTTTGATATTAATCCTTACCTCAATGTAACCGTTGTGAGCTCCGACGGACGTCCAGCCGGCCACCTCTCTGACGA GGAGTTTGTCAATGTCACTGTCCATGGTTCTCGGATCCCTACCCCGTTTGACTGGGTCGCCATGATCTCTCCCGCCGGTTCTGATGTGGGAGCTTGTCCA CTAAGGAAAGCAGAGTATATCCAGACGGGTGACCTTGCTGATCTTCCTCTCCTCTGCCACTACCCTGTTAAGGCACAGTTCTTGAACAACGATCCCGACT ACCTAGGCTGCAAGAACAAGGAGTGTCACAAATACAACGGGACCCAGTGCCAAGTGTTCACCTGTCTCGCCACGATTACTTTCCACGTCGTCAACTTCAG AACAGACGTGGAGTTCGTCTTCCTGACTGGCGGGTTCGATGTTCCCTGTATATTCGCAAGATCCGGGCCCCTGAAATTCGCAAACCCGAACCAGCCCCTC TACGCTCACATCTCGAGCGTCGACTCCTCCGGAACATCTATGAAGGTAACATGGGTGAGTGGAAGTGAGGAGTCACAGGAAGTGCAGTATGGAAATGGAG AAACTGCCAAATCAAAAGCCACCACCTTTACCAAAGATGATATGTGTTCCTCTCTCTTACCAAGTCCAGCTAAGGACTTTGGTTGGCATGACCCTGGCTA CATCCACTCTGCGATCCTAACCCGGCTCGATCCTTCCACCACGTTTTCCTATAAATACGGGAGTGATTCAGTGGGGTGGAGCGATGTAGTAAAGTTGAAG ACACCACCAGCAAGTGGATCAGATGAGGTGAGGTTTGTTGCATATGCTGATATGGGGAAAGCCCCTCTTGACCCTTCTGTTGAACACTTCATTCAGCCTG GATCACTGGCGGTGGTGAAGGCTGTGACCGATGAGGTAGACTCGGGGAACGTAGATTCGATATTCCACCTCGGAGATTTAAGCTATGCAACAGGGTTTTT GGTCGAATGGGACTACTTCCTTCACCTTATTAGCCCCATGGCCTCCAAGGTTCCCTACATGACCGCCGTAGGAAACCACGATAGGGATTATGTTGGTTCA GGCTCGGTTTATACGACATCCGATTCGGGTGGGGAATGTGGAGTTCCATATGAGACATATTTCCCAATGCCAACTTCTGGCAAGGATAAGCCATGGTACT CCATTGAACAAGCAAGTGTTCACTTTACAGTTATATCAACTGAGCATCCTTTGTCAGATGGCTCTGACCAGCTAGAGTGGATTAAAAGTGACTTGGCTTC AGTGGATCGATCGAAAACCCCTTGGCTGGTTTTTGCAGGGCACAGACCAATGTATTCGTCCTCAAACCCGGAAAGCGTAGATGCAAACGTTGTAACGGTT GTAGAGCCATTGATGGAGCAGTACAAGGTTGATCTGGCACTATTCGGACATGTCCACAACTACGAAAGGACGTGCTCCGTTTACCAAGGTGAATGCTTGG CGTTGCCTACTAAAGACTCGAATGGTGTGGACACTTATGATCACAGCAATTACACTGCGCCAGTTCAAGCAGTGGTTGGGACTGCTGGTTACAGTTTGGA CAAATTCTCTGACAGTGCTGCTGGAAAGTGGAGTTTGAAGAGGATTTCTGAGTTTGGATACCTTAGAGCTCATGCTACAAAGACTGAGATCAACTTAGAG TTTGTGAATGCAAATACATTGCAGGCAGATGACAGTTTCCGGATAATCAAATCAGCAAACTGA
AA sequence Show only first row Show all	>Lus10016356 pacid=23161840 polypeptide=Lus10016356 locus=Lus10016356.g ID=Lus10016356.BGIv1.0 annot-version=v1.0 MKILILLVIITLHPTVAKSSVPEEHRIISPSNVLNRRSLLQCFDINPYLNVTVVSSDGRPAGHLSDEEFVNVTVHGSRIPTPFDWVAMISPAGSDVGACP LRKAEYIQTGDLADLPLLCHYPVKAQFLNNDPDYLGCKNKECHKYNGTQCQVFTCLATITFHVVNFRTDVEFVFLTGGFDVPCIFARSGPLKFANPNQPL YAHISSVDSSGTSMKVTWVSGSEESQEVQYGNGETAKSKATTFTKDDMCSSLLPSPAKDFGWHDPGYIHSAILTRLDPSTTFSYKYGSDSVGWSDVVKLK TPPASGSDEVRFVAYADMGKAPLDPSVEHFIQPGSLAVVKAVTDEVDSGNVDSIFHLGDLSYATGFLVEWDYFLHLISPMASKVPYMTAVGNHDRDYVGS GSVYTTSDSGGECGVPYETYFPMPTSGKDKPWYSIEQASVHFTVISTEHPLSDGSDQLEWIKSDLASVDRSKTPWLVFAGHRPMYSSSNPESVDANVVTV VEPLMEQYKVDLALFGHVHNYERTCSVYQGECLALPTKDSNGVDTYDHSNYTAPVQAVVGTAGYSLDKFSDSAAGKWSLKRISEFGYLRAHATKTEINLE FVNANTLQADDSFRIIKSAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24890		ATPAP24, PAP24	ARABIDOPSIS THALIANA PURPLE AC...		Lus10016356 [exp]	0	1
AT1G15980		PnsB1, NDH48, N...	Photosynthetic NDH subcomplex...		Lus10026086 [exp]	1.4	0.9513
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Lus10010515 [exp]	1.7	0.9427
AT1G45474		LHCA5	photosystem I light harvesting...		Lus10042657 [exp]	4.0	0.9431
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10013591 [exp]	4.0	0.9260
AT3G05950			RmlC-like cupins superfamily p...		Lus10029571 [exp]	5.9	0.8828
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10019771 [exp]	8.9	0.9105
AT5G35630		ATGSL1, GLN2, G...	GLUTAMINE SYNTHETASE LIKE 1, g...		Lus10001115 [exp]	14.7	0.8786
AT1G76450			Photosystem II reaction center...		Lus10030719 [exp]	15.7	0.9172
AT1G45474		LHCA5	photosystem I light harvesting...		Lus10021730 [exp]	16.2	0.9050
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Lus10034053 [exp]	16.6	0.9163

Compare expression of checked genes

Lus10016356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.