Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41430 83 / 9e-21 LSR1, CID1, ERD15 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) AT4G14270 74 / 4e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018018 [exp] 87 / 5e-22 AT2G41430 102 / 8e-29 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10035419 [exp] 85 / 3e-21 AT2G41430 113 / 2e-33 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10042014 [exp] 85 / 4e-21 AT2G41430 99 / 1e-27 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10031029 [exp] 84 / 4e-21 AT2G41430 115 / 3e-34 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10040964 [exp] 67 / 4e-14 AT2G41430 69 / 2e-15 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10009847 [exp] 57 / 1e-10 AT2G41430 63 / 3e-13 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10019769 [exp] 0 / 1 AT2G41430 91 / 1e-23 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G023100 [exp] 95 / 1e-24 AT4G14270 89 / 3e-23 unknown protein Potri.003G202500 [exp] 91 / 4e-23 AT2G41430 81 / 5e-20 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Potri.006G044600 [exp] 90 / 4e-23 AT2G41430 122 / 3e-36 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Potri.016G041600 [exp] 90 / 5e-23 AT2G41430 121 / 1e-35 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Potri.010G182800 [exp] 68 / 1e-14 AT4G14270 65 / 6e-14 unknown protein Potri.008G074600 [exp] 67 / 3e-14 AT4G14270 66 / 2e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016358 pacid=23161800 polypeptide=Lus10016358 locus=Lus10016358.g ID=Lus10016358.BGIv1.0 annot-version=v1.0 ATGGCGATGGTTTCGGGTCAGAGATCGGCGCTTAACCCCAACGCGCCGGCATTCGTCCCGGCTATGTACCAGCGAGTGGAGGATTTCTCACCGGAATGGT GGGAGCTCGTGAAGAGCACGACGTGGTTCCGCGATTACTGGCTGAGCCTGAATCCGGAGGGAAGCTTCGACGACGAGATAATCGAGGATCTACTGCCGGA AGAAATCGATCTGGCGGCGGATATGACGGGCACAGTAGCTGGAGATGTAAAACTGGGTGCGGAATCCGAGAAATACAACGCTCTGAACGAAATGAACAGG GCTGATCGTGGACGCGAAGACGTTGCTGAGAGATCTGAATCAGTCCCCGACGAGGTCACCGAAGGAGAAGATTCCGAGATCGGGAGTGGAGCCGGCGAAG TTCCAGATGAGGCCGGTGGGGAACCGTATGGGAAGTCCCAGGCCCGGTGGACGCCGGATCCAGCAGCCTCGTTGAGTCGGGAGCTCGTGAGATCAGAGAG GGAGGCTAATAATGGCGTTTTGAGTAGGTCGTCCGGTTTGATTGTAGATAGATGTTTGTAA
AA sequence Show only first row Show all	>Lus10016358 pacid=23161800 polypeptide=Lus10016358 locus=Lus10016358.g ID=Lus10016358.BGIv1.0 annot-version=v1.0 MAMVSGQRSALNPNAPAFVPAMYQRVEDFSPEWWELVKSTTWFRDYWLSLNPEGSFDDEIIEDLLPEEIDLAADMTGTVAGDVKLGAESEKYNALNEMNR ADRGREDVAERSESVPDEVTEGEDSEIGSGAGEVPDEAGGEPYGKSQARWTPDPAASLSRELVRSEREANNGVLSRSSGLIVDRCL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10016358 [exp]	0	1
AT4G19985			Acyl-CoA N-acyltransferases (N...		Lus10028990 [exp]	3.0	0.8838
AT4G33540			metallo-beta-lactamase family ...		Lus10008550 [exp]	10.0	0.8572
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10019117 [exp]	10.9	0.8734
AT2G15890		MEE14	maternal effect embryo arrest ...		Lus10012044 [exp]	12.5	0.8365
AT4G16770			2-oxoglutarate (2OG) and Fe(II...		Lus10004746 [exp]	13.8	0.8482
AT2G39000			Acyl-CoA N-acyltransferases (N...		Lus10040401 [exp]	14.0	0.8608
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10028166 [exp]	14.8	0.8368
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Lus10041854 [exp]	23.0	0.8417
AT1G55280			Lipase/lipooxygenase, PLAT/LH2...		Lus10039181 [exp]	23.1	0.8477
AT3G51500			unknown protein		Lus10017918 [exp]	24.0	0.8256

Compare expression of checked genes

Lus10016358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.