Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30890 491 / 2e-168 UBP24 ubiquitin-specific protease 24 (.1.2.3) AT2G22310 94 / 2e-20 ATUBP4 ubiquitin-specific protease 4 (.1.2) AT4G24560 96 / 3e-20 UBP16 ubiquitin-specific protease 16 (.1) AT1G17110 95 / 6e-20 UBP15 ubiquitin-specific protease 15 (.1.2) AT4G39910 90 / 4e-19 ATUBP3 ubiquitin-specific protease 3 (.1) AT2G24640 90 / 1e-18 UBP19 ubiquitin-specific protease 19 (.1.2) AT5G57990 88 / 9e-18 UBP23 ubiquitin-specific protease 23 (.1) AT4G31670 84 / 1e-16 UBP18 ubiquitin-specific protease 18 (.1) AT3G14400 83 / 3e-16 UBP25 ubiquitin-specific protease 25 (.1) AT5G46740 81 / 1e-15 UBP21 ubiquitin-specific protease 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019766 [exp] 1023 / 0 AT4G30890 520 / 0.0 ubiquitin-specific protease 24 (.1.2.3) Lus10019767 [exp] 102 / 1e-25 AT4G29035 50 / 1e-08 Plant self-incompatibility protein S1 family (.1) Lus10013726 [exp] 108 / 1e-24 AT3G14400 641 / 0.0 ubiquitin-specific protease 25 (.1) Lus10005591 [exp] 107 / 5e-24 AT3G14400 639 / 0.0 ubiquitin-specific protease 25 (.1) Lus10020116 [exp] 103 / 6e-23 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10026918 [exp] 102 / 1e-22 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10041705 [exp] 92 / 5e-20 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1) Lus10024043 [exp] 92 / 5e-20 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1) Lus10035825 [exp] 94 / 2e-19 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G202800 [exp] 598 / 0 AT4G30890 577 / 0.0 ubiquitin-specific protease 24 (.1.2.3) Potri.011G112800 [exp] 103 / 5e-23 AT3G14400 690 / 0.0 ubiquitin-specific protease 25 (.1) Potri.007G093600 [exp] 99 / 5e-22 AT4G39910 679 / 0.0 ubiquitin-specific protease 3 (.1) Potri.011G095200 [exp] 96 / 2e-20 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.005G074900 [exp] 93 / 3e-20 AT4G39910 678 / 0.0 ubiquitin-specific protease 3 (.1) Potri.002G104800 [exp] 95 / 5e-20 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1) Potri.018G009500 [exp] 95 / 5e-20 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.001G394600 [exp] 94 / 5e-20 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1) Potri.006G270600 [exp] 91 / 7e-19 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.005G156900 [exp] 89 / 4e-18 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Lus10016360 pacid=23161821 polypeptide=Lus10016360 locus=Lus10016360.g ID=Lus10016360.BGIv1.0 annot-version=v1.0 ATGGGTGATTCGAAACTACTACTATTCGGCTCATTCACGGAGGATGAGATCAGAGCATTGGGGCAAAAGAAGGCAGCTGAGAAAGCTGGAAGTTCTGTGG AGAAGAAAGAAGTTCAGGTTCAATCATCAAAGCCAATGAGTGGGATTTCTTTTGGTGAGTTTAGATGTGAATTGAATAGGGAAGTGGGATCCTCCTCCAA GGGGAAATCGGTTATTCAGAATGGAAACGCCGTGGAGCACAAAGATGTGAAGGTGTTGAATGAAACAAATAAAACTCATGTTCCTGCTAATCCACAAGAA ACCGGAAAGGTTGACGATAATACCAGCGTAGTTGCTCTTAGTAATGGTGTGAAGGGCTTGATGAAAGATAGTAGTGGTGGTTCGAGTTCCTTACCTGCAT CTCAGCTTGATAATGGTGCTATAACAAATCCCTGGAACTCAAAATTTCAAGTTCTTGATAATGAAGCTTCCGCCCGTGGACATAAGGGAGACATTTCAGT GGTGGATGTGAAGAAGGAGAATGGACAAAAACCACCCAATGGATCTATTGCAACAAGCAAGAGTTTTATACCGCATGGCTTGATTAATTCAGGGAACTTG TGCTTTCTGAATGCCACCCTGCAGGCTCTCTTATCTTGCTCTCCTTTTTCTCGGCTATTGCAGGAGCTTAGAAGTCGAGATATCCGTAAGGTTGACTTTC CAACATTAAGTGCTTTCACGGAGCTAGTTTCCAACTGTGAGGTGCCAAGTAATTCAAATGTGAAAATGCACCCTGCCGCTCTTGAGACTGGTAGACCATT TCGCCCTGCTATGTTTGAAGCGGTGCTTAAACATTTCACTCCTGATGTTCCAAGCAGCATATCAGGGAGGCCAAGGCAGGAAGATGCTCAAGAGTTTTTG AGTTTCATCTTGGACCAAATACACGTTGAGTTGCTCAAGCTTAATGGGCAAACTTCTGGCGGAAGCGATGCCAGATCTTCTCTGGTGTCTTCCAGTGAAG ATGATGGATGGGAAACTGTTGGACCGAAGAACAAGTCTGCAGTAACTAGGACTCAGAGCTTCCTTCCATCTCCATTAACTGATATATTTGGTGGGCAATT AAGAAGTCTGGTGACTGCTAAAGGTAATCAACCCTCTGCTAATGTGGAGCCATTCCTTGTGCTCCACCTTGATATTTGTCACGATGCTGTTTACACCATA GAGAATGCTCTTCGTTTGTTCTCTGTACCTGAAAATCTGGAAGGGTATAGAGCCTCAACCACGGGAAAGGCTGGTGTAGTCGCTGCCAGGAAGTCGGCAA AGATACGGACCCTCCCAAAGATAATGATATTGCATGTCAAGCGTTTTAGCTATGGGATTCATGGTAGCACAAAGTTGAACAAGCCTGTGCACTTCCCTCT AGAATTGATACTCGGTCGAGAACTCCTTGTATCGCCATCTTCCGAGAGCCGGAAATACGAGCTTGTGGCTACGATAACTCATCACGGGAGGGAACCATCA AAGGGCCACTACACTGCAGATGCCCTCTATCCAAATCGACAGTGGCTTCGATTCGACGATGCATCGGTTACTGCTATCGGGATAAACAAGATGCTTGTCT TCCACGGAAAGGTCACTCCAGAAAAGAGTAGAACAAATGATATTGTCTCGAAACTCCAGCTCAATGTAGAACCGGGTTCGATTGTCACCACTGATTATGT TGCCTTTCGATTGGCAGTCAGCGGCTACCGTCCGGCCATAATCGTTGGTAAGTTGTATTGTGCTCCGTTCCTCGTTGGAGGAACACGCCATTATCATCAT TATTCTGCAAACCAATTTGATCACTGA
AA sequence Show only first row Show all	>Lus10016360 pacid=23161821 polypeptide=Lus10016360 locus=Lus10016360.g ID=Lus10016360.BGIv1.0 annot-version=v1.0 MGDSKLLLFGSFTEDEIRALGQKKAAEKAGSSVEKKEVQVQSSKPMSGISFGEFRCELNREVGSSSKGKSVIQNGNAVEHKDVKVLNETNKTHVPANPQE TGKVDDNTSVVALSNGVKGLMKDSSGGSSSLPASQLDNGAITNPWNSKFQVLDNEASARGHKGDISVVDVKKENGQKPPNGSIATSKSFIPHGLINSGNL CFLNATLQALLSCSPFSRLLQELRSRDIRKVDFPTLSAFTELVSNCEVPSNSNVKMHPAALETGRPFRPAMFEAVLKHFTPDVPSSISGRPRQEDAQEFL SFILDQIHVELLKLNGQTSGGSDARSSLVSSSEDDGWETVGPKNKSAVTRTQSFLPSPLTDIFGGQLRSLVTAKGNQPSANVEPFLVLHLDICHDAVYTI ENALRLFSVPENLEGYRASTTGKAGVVAARKSAKIRTLPKIMILHVKRFSYGIHGSTKLNKPVHFPLELILGRELLVSPSSESRKYELVATITHHGREPS KGHYTADALYPNRQWLRFDDASVTAIGINKMLVFHGKVTPEKSRTNDIVSKLQLNVEPGSIVTTDYVAFRLAVSGYRPAIIVGKLYCAPFLVGGTRHYHH YSANQFDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30890		UBP24	ubiquitin-specific protease 24...		Lus10016360 [exp]	0	1
AT5G12220			las1-like family protein (.1.2...		Lus10036063 [exp]	9.0	0.8473
AT5G08550		ILP1	increased level of polyploidy1...		Lus10001949 [exp]	15.7	0.7999
AT1G18950			DDT domain superfamily (.1)		Lus10042167 [exp]	17.4	0.8414
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Lus10040584 [exp]	20.5	0.8233
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Lus10033095 [exp]	22.0	0.8156
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Lus10013182 [exp]	28.8	0.8347
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Lus10034064 [exp]	29.7	0.8426
AT5G01460			LMBR1-like membrane protein (....		Lus10004814 [exp]	30.7	0.8183
AT2G07750			DEA(D/H)-box RNA helicase fami...		Lus10034110 [exp]	34.4	0.8178
AT5G46920			Intron maturase, type II famil...		Lus10003020 [exp]	41.1	0.8304

Compare expression of checked genes

Lus10016360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.