Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20740 886 / 0 EMB3131 EMBRYO DEFECTIVE 3131, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G64320 179 / 2e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09060 178 / 3e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G04760 177 / 4e-47 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G09900 174 / 2e-46 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G02150 176 / 3e-46 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 175 / 6e-46 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G03560 174 / 6e-46 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G59900 171 / 4e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G06710 168 / 3e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019764 [exp] 820 / 0 AT4G20740 590 / 0.0 EMBRYO DEFECTIVE 3131, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10019765 [exp] 450 / 4e-155 AT4G20740 308 / 2e-100 EMBRYO DEFECTIVE 3131, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10019763 [exp] 192 / 4e-58 AT4G20740 115 / 4e-31 EMBRYO DEFECTIVE 3131, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10018567 [exp] 182 / 8e-49 AT1G03560 862 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10042529 [exp] 185 / 2e-48 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 183 / 3e-48 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 179 / 4e-47 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021989 [exp] 181 / 5e-47 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 176 / 9e-47 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G203100 [exp] 1040 / 0 AT4G20740 964 / 0.0 EMBRYO DEFECTIVE 3131, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G217600 [exp] 191 / 3e-51 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 189 / 7e-51 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G019300 [exp] 184 / 1e-49 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G271200 [exp] 184 / 1e-49 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G074500 [exp] 180 / 3e-48 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 180 / 5e-48 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 181 / 7e-48 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G242200 [exp] 177 / 2e-47 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G123600 [exp] 179 / 1e-46 AT1G06710 1248 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10016361 pacid=23161861 polypeptide=Lus10016361 locus=Lus10016361.g ID=Lus10016361.BGIv1.0 annot-version=v1.0 ATGCCACCCAACTCCCCGCCACCGTCCGCTTCACAGAAATTCTACTTCTTCTACGGCCACCGAAAACCCTCTCAGAACCGCCCCATAGTCCGCGGCGGCG TATTCACAAACCGCAAACCTTCCAAACCTCCTCCCAACGAATCAATCTCCTCTCCGAACAAAAAAAACCCCTTTTCTCCATTCGACATCACAAAATGGGA CCCACAACACCCATCACCTCCGCCACCGCGCTCTCTGGCCGTCTCCGAGCGCCTCTCCCCGATCGCCCGGTTCGTGGTCGACGCCTTCCGTAAGAACGGC AACCACTGGGGCCCACCGGTGGTAGCCGAGCTCCGAAAGCTCCGCCGCCTAACGCCGGAGCTCGTGGCGGAAGTTCTGAAAGTGGAAAGCAACCCTCACT CTGCAACCAAGCTATTCCACTGGGCAGGTAAGCAAAAAGGTTACCATCATAACTTCTCCTCCTATAATGCTTTCGCTTACTGCTTGAATCGAGCTACCTA CTACCGCGCTGCGGATCAGCTCCCCGAGCTGATGCAATCTCAGGGCAAGCAGCCGAGTGAGAAGCAGTTCGAGATTCTGATCAGAATGCATTCGGATGCC AATAGAGGGCTTAGGGTTCACTATGTGTATCAGAAGATGAAAAAATTTGGTGTGAAGCCTCGTGTTTTCTTGTACAACAGAATATTAGATGCTTTGATGA GGAATGGTCATTTCGATTTGGCTTTGTCTGTGTATGATGATTTCAGGAGTGGTGGATTAGTGGAAGAGACTGTTACTTACATGATTCTGATCAAGGGTCT TTGTAAGGCTGGTAGGATAGTGGAGATGAAAGAGGTCTTGAATCGAATGAGGGATAATCTGTGCAAACCGGATGGTTTTGCTTACACAGCAATGGTTAGA GTACTGATCGGGGAAGGGAATTTGGATGGATGTTTACAGGTGTGGGAGGAGATGAAGGCTGATGGAGTCGAGCCAGACGTTATGGCCTATTCGACTGTGG TGACCGGGTTGTGTAAGGGGAAGAGGGTGCAGAAGGGGTATGAGTTGTTTAAAGAGATGAAGGAGAAGAAAGGGTTTTTGATTGATAGAGGGATTTATGG TGTTTTAGTGGATGCATTTGTGGATGATGGGAAAATTGGTGCAGCTTGTGATATGTTGAAGGATTTGGTTGATTCGGGGTATAGAGCCGATTTGGGGGTA TATAATTCGCTTTTTCGAGGTCTGTGCAATGTGAAACGGGTTGATAAGGCTTATAAGCTTTTCCAGGTCACTGTACAGGAAGGTCTCGAACCGGATTTTG GAACTGTGAATCCTATGCTGGCTGCCTTTGCAGAGATGGGAAAGATGGATGATTTCTGCATGCTGTTGTTACAGATGGAGAGATTAGGGTTTCGGGTACT TGACGATCTCTCAAAGTTTTTATCTTTCATGGTTGAGAAGGAAGAGAGAACGATTGTGACGCTGGAAGTGTTTCGGAATCTCAAAGCAAGAGGGTATAGC AGTGTTGAAATGTACAATGTACTTATGGAGGCACTCCTGAAGGTTGGGGAGGTGAAAATGGCGTTATTTTTATTTGACGAGATGAAAGATTCGAACTTTG AGCCGGATTCGGATAGTTACAGTACTGCGATTTCATGTTTGGTTGAAGATGGCAAGATCAAGGATGCTTGCCATTGTCATAATAAGATAATTGAGATGTC CTGTGTTCCTTCTGTTGCTGCGTATAGTTCTTTAGCCAAGGGGCTATGCAAACTCGGAGAGATTGATGCCGCTATGATGCTTGTTCGTGATTGTCTTGGC AATGTCATCAGCGGGCCCATGGACTTCAAGTACAGCCTCGTGGTTATCCACTCGTGTAGAGCAGGCGAAGCGGATATGGTTATGGAAGTTGTTAATGAGA TGATGAAGGAAGGTGTGCCTCCCAATGAAATCATATGCTCTGCCGTGATCTTTGGAATGTGCAAGCATGGAACTTTGGAAGCGGCGAGACAGGTTTTCGC CACTTTGAGGAAGCGGAAGATTCTGACGGAAGCGAAGATTATCGTTTACGACGAGATTTTGATTGATCACATGAAGAGGAAGGCGGCTGACTTGGTGCTC TCAGGGTTGAAGTTTTTCGGGCTGGAGTCGAAACTAAAGGCCAAAGGGAGTACGCTTCTGTCAACTTGA
AA sequence Show only first row Show all	>Lus10016361 pacid=23161861 polypeptide=Lus10016361 locus=Lus10016361.g ID=Lus10016361.BGIv1.0 annot-version=v1.0 MPPNSPPPSASQKFYFFYGHRKPSQNRPIVRGGVFTNRKPSKPPPNESISSPNKKNPFSPFDITKWDPQHPSPPPPRSLAVSERLSPIARFVVDAFRKNG NHWGPPVVAELRKLRRLTPELVAEVLKVESNPHSATKLFHWAGKQKGYHHNFSSYNAFAYCLNRATYYRAADQLPELMQSQGKQPSEKQFEILIRMHSDA NRGLRVHYVYQKMKKFGVKPRVFLYNRILDALMRNGHFDLALSVYDDFRSGGLVEETVTYMILIKGLCKAGRIVEMKEVLNRMRDNLCKPDGFAYTAMVR VLIGEGNLDGCLQVWEEMKADGVEPDVMAYSTVVTGLCKGKRVQKGYELFKEMKEKKGFLIDRGIYGVLVDAFVDDGKIGAACDMLKDLVDSGYRADLGV YNSLFRGLCNVKRVDKAYKLFQVTVQEGLEPDFGTVNPMLAAFAEMGKMDDFCMLLLQMERLGFRVLDDLSKFLSFMVEKEERTIVTLEVFRNLKARGYS SVEMYNVLMEALLKVGEVKMALFLFDEMKDSNFEPDSDSYSTAISCLVEDGKIKDACHCHNKIIEMSCVPSVAAYSSLAKGLCKLGEIDAAMMLVRDCLG NVISGPMDFKYSLVVIHSCRAGEADMVMEVVNEMMKEGVPPNEIICSAVIFGMCKHGTLEAARQVFATLRKRKILTEAKIIVYDEILIDHMKRKAADLVL SGLKFFGLESKLKAKGSTLLST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Lus10016361 [exp]	0	1
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10015741 [exp]	5.4	0.7936
AT1G77360			Tetratricopeptide repeat (TPR)...		Lus10033591 [exp]	5.7	0.7504
AT3G60850			unknown protein		Lus10004021 [exp]	7.5	0.7365
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Lus10040927 [exp]	12.3	0.7419
AT2G19260			RING/FYVE/PHD zinc finger supe...		Lus10015537 [exp]	13.4	0.7333
AT2G31440			unknown protein		Lus10027036 [exp]	14.3	0.7272
AT5G57710			Double Clp-N motif-containing ...		Lus10015511 [exp]	14.5	0.7063
AT4G17960			unknown protein		Lus10030960 [exp]	19.4	0.7399
AT1G80870			Protein kinase superfamily pro...		Lus10026069 [exp]	23.5	0.7372
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Lus10033187 [exp]	24.5	0.7176

Compare expression of checked genes

Lus10016361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.