Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03990 110 / 2e-27 unknown protein AT3G51940 107 / 2e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039572 [exp] 265 / 4e-86 AT3G51940 123 / 9e-32 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G021100 [exp] 246 / 8e-78 AT3G51940 143 / 2e-38 unknown protein Potri.006G045900 [exp] 115 / 1e-29 AT5G03990 137 / 1e-38 unknown protein Potri.016G042400 [exp] 113 / 2e-28 AT5G03990 138 / 9e-39 unknown protein Potri.006G262800 [exp] 74 / 4e-15 AT5G03990 87 / 1e-20 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016362 pacid=23161863 polypeptide=Lus10016362 locus=Lus10016362.g ID=Lus10016362.BGIv1.0 annot-version=v1.0 ATGGGTAATTGGAAGAATCGCCCTTCTCGGCGATGGTCCTACAATCAAGATAGACGCCCTCCCAGAAACTACTACGATCCTCCTCCTTACCAAGAAAACC TTGATGATGGTATACCTGGATGGGAAAAGGAGTTCTGTTTCGCTGTTGGTGCAGTGCCATGGCATAGGGTTGTAGATGCTAAATACTTCTCTTTCTGCCA AGCTCCGATACTTAAATGGGATGACTCAGCTGGCAAAGAAGCATTTGATAATGCCAAGAGCCGCTTCTGGGCGCTTATAAATGGCCTCCCTTGTGACATT CCACGGCCTGATCCCGACGCTTGTATCGATGAAATAGACTGGAATCCTTATATCGACCCTGAGCTGATTCTTGAGTTGGAGGAAGAGTGTTTTGCTCCAG TGGAGGATGAGAGCGGATTCGAGAGCAGAAAGAAAAAAACCAGTGACTTCTTCCCTGATCAACTTGAAGGCTCGAGTGTGACTCAGAATTTTAAGCAGCA GAGCAAAGTGGAAGGTCAAGGCTGGGGAAATACATGGGAAGATAACTTGAGAGAATCAATTATTTGGAATACACCTGATAACCCCTGGGAGATGGCTTGC AATCAGGGAGATGAAGGTCCGAATGCGGGTTGGCCAGTTGGAGGTGATGAATCGTGGGGATGGAACCCTGATTCAGCCTATGTTCTACAATTGAATGATT CACCGAACCGAGGCAATGCTTGGGAGGGAAACCGTGAAGCGGCTATCCCGCCTAAGGCTGACGGCTGGGGTGAATATGCAGATGGGTCTTGGGGTCATAA TCAGCAACAGCCGAGGAAATGGAACGATGGTTGGCTTCCTCAAGAAGAAGGAAGCTTTCGAGCTAGTGGCAATCCGAGAGCTGGAGGGTGGAGAAACGAC AGCGGCAGGAAAGCATGGGGGAGGAAACAACAATGGGATGATGATCAAGGCCGCGAAACAAGAAACTCGGGCTACAGAAAGGCTAGCGGCGGTTGGGGAA CCGGTAATAAGAATTCTTGGAGGAATGATGGCAGTCATCAACATACAATAAGTGGCAGTTGGGGAACCGGTAATAACGATTCTTGGAGAAACGAAGGCAG TCATCAACATACAGCAGCAGGATACACAAAATCCAGGTATGAACGGAATGAATACCGGGATGGCAGCCACCATTGGAGGGGCGGGAAGACGAAGAAGAGG GTAAGTTTTGGTTATTAG
AA sequence Show only first row Show all	>Lus10016362 pacid=23161863 polypeptide=Lus10016362 locus=Lus10016362.g ID=Lus10016362.BGIv1.0 annot-version=v1.0 MGNWKNRPSRRWSYNQDRRPPRNYYDPPPYQENLDDGIPGWEKEFCFAVGAVPWHRVVDAKYFSFCQAPILKWDDSAGKEAFDNAKSRFWALINGLPCDI PRPDPDACIDEIDWNPYIDPELILELEEECFAPVEDESGFESRKKKTSDFFPDQLEGSSVTQNFKQQSKVEGQGWGNTWEDNLRESIIWNTPDNPWEMAC NQGDEGPNAGWPVGGDESWGWNPDSAYVLQLNDSPNRGNAWEGNREAAIPPKADGWGEYADGSWGHNQQQPRKWNDGWLPQEEGSFRASGNPRAGGWRND SGRKAWGRKQQWDDDQGRETRNSGYRKASGGWGTGNKNSWRNDGSHQHTISGSWGTGNNDSWRNEGSHQHTAAGYTKSRYERNEYRDGSHHWRGGKTKKR VSFGY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03990			unknown protein		Lus10016362 [exp]	0	1
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10018705 [exp]	1.4	0.8944
AT1G22040			Galactose oxidase/kelch repeat...		Lus10020960 [exp]	2.6	0.9025
AT5G50380		ATEXO70F1	exocyst subunit exo70 family p...		Lus10022459 [exp]	4.9	0.8810
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10000940 [exp]	6.2	0.8841
AT5G51880			2-oxoglutarate (2OG) and Fe(II...		Lus10038893 [exp]	7.3	0.8700
AT3G61180			RING/U-box superfamily protein...		Lus10029582 [exp]	7.4	0.8807
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10036203 [exp]	7.4	0.8677
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10016898 [exp]	7.9	0.8776
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10004005 [exp]	8.2	0.8041
AT1G16180			Serinc-domain containing serin...		Lus10026111 [exp]	11.0	0.8781

Compare expression of checked genes

Lus10016362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.