Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63440 462 / 1e-160 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) AT2G41510 445 / 2e-153 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1) AT1G75450 301 / 6e-98 ATCKX6, ATCKX5, CKX5 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) AT5G21482 259 / 7e-82 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) AT5G56970 252 / 5e-79 ATCKX3, CKX3 cytokinin oxidase 3 (.1) AT2G19500 237 / 2e-73 ATCKX2, CKX2 cytokinin oxidase 2 (.1) AT4G29740 235 / 2e-73 ATCKX4, CKX4 cytokinin oxidase 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005317 [exp] 579 / 0 AT3G63440 536 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10039574 [exp] 578 / 0 AT3G63440 544 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10018039 [exp] 404 / 3e-140 AT2G41510 435 / 5e-150 cytokinin oxidase/dehydrogenase 1 (.1) Lus10031046 [exp] 397 / 3e-137 AT2G41510 423 / 1e-144 cytokinin oxidase/dehydrogenase 1 (.1) Lus10035433 [exp] 389 / 2e-134 AT2G41510 424 / 8e-146 cytokinin oxidase/dehydrogenase 1 (.1) Lus10042035 [exp] 356 / 9e-121 AT2G41510 367 / 9e-123 cytokinin oxidase/dehydrogenase 1 (.1) Lus10003845 [exp] 306 / 5e-101 AT1G75450 578 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10024289 [exp] 303 / 1e-98 AT1G75450 717 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10019762 [exp] 274 / 5e-91 AT2G41510 209 / 2e-64 cytokinin oxidase/dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G020900 [exp] 528 / 0 AT3G63440 800 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.003G203600 [exp] 526 / 0 AT3G63440 799 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.016G044100 [exp] 454 / 2e-157 AT2G41510 752 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.006G047900 [exp] 447 / 8e-155 AT2G41510 772 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.005G232300 [exp] 305 / 3e-99 AT1G75450 802 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.002G030500 [exp] 303 / 1e-98 AT1G75450 785 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.006G152500 [exp] 271 / 3e-86 AT5G56970 603 / 0.0 cytokinin oxidase 3 (.1) Potri.006G221000 [exp] 243 / 2e-75 AT5G21482 674 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Potri.007G066100 [exp] 240 / 3e-74 AT5G56970 500 / 3e-173 cytokinin oxidase 3 (.1) Potri.011G160900 [exp] 45 / 5e-05 AT1G30760 646 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF09265 [flax] [poplar] Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Representative CDS sequence Show only first row Show all	>Lus10016363 pacid=23161844 polypeptide=Lus10016363 locus=Lus10016363.g ID=Lus10016363.BGIv1.0 annot-version=v1.0 ATGACAATATTGCTCTTGAGCTGCATAACAATAACAGTAAATCCTTGTTTCCGTGGCAACCATTCTTCATTGGCAACGCTCTCGACAGAAGGCCATTTCA CCTTCGATGAAGTTCACCATGCAGCCAAAGACTTTGGGAATAGGTTTCAGATGCTTCCTTTGGCGGTTCTTCATCCAAAATCCGTTGCCGATATCGCAAC TACCATAAAGCATATTTGGCAGATGGGTCCTCGTTCACAACTTACAGTAGCCGCCAGAGGCCATGGCCACTCACTTCAGGGTCAGGCACAAGCCCACCAG GGAGTTGTTGTCAACATGGAGTCGCTGCAGAGTCATAAAATGCAAGTTTACACCGGAGTTCAACCATACGTGGACGTCTCAGGAGGGGAGTTATGGATAA ATATCCTGCTTGAGTCTCTGAAGTATGGGCTGGCGCCAAAATCTTGGACAGACTACCTGCATTTGACTGTTGGAGGTACTTTGTCCAATGCCGGGATCAG CGGGCAGGCTTTTCGACATGGACCTCAAATAAGTAATGTTCATCACCTGGAAGTCATTACAGGAAAAGGGGAGGTACTTAATTGCTCAGAGAAACAGAAT GAAGATCTCTTTCACAGCGTTCTTGGAGGACTTGGTCAGTTTGGCATCATAACACGTGCAAGAATATCACTGGAACCAGCACCAGAGATGGTGAAATGGA TTAGAGTTCTCTACTCAAACTTCACCACATTTACCAGAGACCAGGAGCATTTAATATCTGCAAGAAGCACATTTGACTATGTTGAAGGATTTGTGATAAT CAATAGGACTGGACTCTTGAACAACTGGAGATCATCATTCAATCCTCAAGATCCAGTTCAAGCCAGCCAGTTCGAATCTGATGGAAAAACTCTATACTGT CTGGAACTAGCCAAATATTTTCGGAACAATGAGAGAGATGCAGCACATGAGGGGATCATATTCAATGAACAATTGATTGATAAGTACGAGACAGAGCACA GGGAAAACATCGTGGAAGCACTACCCGCTGAAATGGAGACCCACTGCTACGAAGCATACAATGCTGTTGGACCGTCAAAGCGGCGGAGCCTTCTTAATCC TTGCCGCCTCCGCTGTGTATCGCCGTCCGAACGATCGGCGATATGGCAATTGGGAACTTTGGCTATGAAGTGA
AA sequence Show only first row Show all	>Lus10016363 pacid=23161844 polypeptide=Lus10016363 locus=Lus10016363.g ID=Lus10016363.BGIv1.0 annot-version=v1.0 MTILLLSCITITVNPCFRGNHSSLATLSTEGHFTFDEVHHAAKDFGNRFQMLPLAVLHPKSVADIATTIKHIWQMGPRSQLTVAARGHGHSLQGQAQAHQ GVVVNMESLQSHKMQVYTGVQPYVDVSGGELWINILLESLKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFRHGPQISNVHHLEVITGKGEVLNCSEKQN EDLFHSVLGGLGQFGIITRARISLEPAPEMVKWIRVLYSNFTTFTRDQEHLISARSTFDYVEGFVIINRTGLLNNWRSSFNPQDPVQASQFESDGKTLYC LELAKYFRNNERDAAHEGIIFNEQLIDKYETEHRENIVEALPAEMETHCYEAYNAVGPSKRRSLLNPCRLRCVSPSERSAIWQLGTLAMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63440		ATCKX6, CKX6, A...	CYTOKININ OXIDASE 6, cytokinin...		Lus10016363 [exp]	0	1
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025226 [exp]	8.0	0.7819
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10011238 [exp]	11.9	0.7989
AT5G24430			Calcium-dependent protein kina...		Lus10008875 [exp]	12.3	0.8419
AT4G19185			nodulin MtN21 /EamA-like trans...		Lus10033316 [exp]	34.9	0.7783
AT5G09630			LisH/CRA/RING-U-box domains-co...		Lus10007106 [exp]	52.0	0.7595
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10001304 [exp]	61.6	0.7703
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Lus10017527 [exp]	77.5	0.7686
AT5G58700		ATPLC4	phosphatidylinositol-speciwc p...		Lus10018240 [exp]	92.2	0.7521
AT3G50150			Plant protein of unknown funct...		Lus10039777 [exp]	96.0	0.7344
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10001203 [exp]	100.7	0.7468

Compare expression of checked genes

Lus10016363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.