Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07690 766 / 0 6-phosphogluconate dehydrogenase family protein (.1) AT2G41540 748 / 0 GPDHC1 6-phosphogluconate dehydrogenase family protein (.1.2.3) AT5G40610 68 / 4e-12 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019761 [exp] 918 / 0 AT3G07690 744 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Lus10035438 [exp] 782 / 0 AT2G41540 800 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Lus10031052 [exp] 781 / 0 AT2G41540 803 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Lus10022308 [exp] 61 / 1e-09 AT5G40610 607 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Lus10014889 [exp] 59 / 3e-09 AT5G40610 609 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G203800 [exp] 842 / 0 AT3G07690 768 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Potri.006G046900 [exp] 791 / 0 AT2G41540 820 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Potri.016G043400 [exp] 771 / 0 AT2G41540 815 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Potri.017G070900 [exp] 64 / 7e-11 AT5G40610 613 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0106 [flax] [poplar] 6PGD_C PF07479 [flax] [poplar] NAD_Gly3P_dh_C NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CL0063 [flax] [poplar] NADP_Rossmann PF01210 [flax] [poplar] NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
Representative CDS sequence Show only first row Show all	>Lus10016364 pacid=23161915 polypeptide=Lus10016364 locus=Lus10016364.g ID=Lus10016364.BGIv1.0 annot-version=v1.0 ATGGTTGAGAATACCGAAGCAGCGGATCATACCGTCTATCCAAACGGAAACGGCGCCATTCTAGAACAGAAGCTGGACGACCTCCGTCACCTCTTCAACA AACCCGACGGCGACCCTTTACGTATTGTCGGAGTGGGAGCAGGAGCTTGGGGGAGTGTTTTCATCGCTCTGTTACAAGACAGCTATGGACATTTGAGAGA CAAAGTTCTGATTAGGATATGGAGAAGGCCAGGCAGAGCTGTGGATAGAGCCACTGCAGAGCATCTGTTTGAAGTGATCAATTCGAGGGAGGATGTGTTG AGGAGATTGATTAGGAGGTGTGCTTATCTCAAGTATGTGGAAGCTAGGTTGGGTGATAGGACGTTGTATGCGGATGAGATTTTGAAAGATGGGTTTTGCT TGAACATGATTGACACTCCGCTTAGTCCTTTGAAAGTTGTGAGCAACTTGCAGGAGGCTGTGTGGGATGCTGACATTGTTATTAATGGATTGCCGTCTAC TGAAACTAGGGAGGTGTTTGAGGAGATTAGTAGGTTTTGGAAGGAGAGGAGGACGGCTCCGGTGATCATATCTTTGGCTAAGGGTGTGGAAGCCGAGTTG GGGACCGAGCCTCGGATCATCACTCCCACTCAGCTGATCAACCGAGCAACTGGAGTTCCAATTGAGAACATACTTTACCTTGGAGGTCCTAACATTGCCT CTGAGATATACCATAAGGAATATGCTAATGCTCGAATCTGCGGGTCGGAGAAGTGGAGGAAACCGCTGGCGAAGTTTCTAAGGCAACCCCACTTTATAGT TTGGGATAATGGCGATCTTGTTACTCATGAAGTCATGGGCGGGTTGAAGAATGTCTATGCCATTGGCGCTGGAATGGTAGCAGCTCTTACGAACGAAAGC GCAACAAGCAAGTCGGTTTACTTTGCACACTGTACCTCGGAGATGATATTCATCACTCACCTATTGGCAAAAGAGCCAGAGAGGCTTGCAGGTCCCTTGT TGGCCGACACTTACGTTACCTTACTGAAAGGCCGTAATGCATGGTACGGCCAGCAATTAGCCAAAGGGGTACTGAGTCTTGAAATGGGGGACAGCATCAA GGGCAAGGGAATGATTCAGGGTGTCTCTGCTGTAAAAGCATTCTATGAGCTGCTAAGTCAGTCCAGCTTAAGCGTCCTGCATCCTGAGGAGAAGAAGCCT GTGGCTCCGGTCGAGCTTTGCCCCATACTCAAGATGCTATATCGAATTCTAATCATCAGAGAGTTTCCTGCAGAAGCCATTCTTCAAGCACTGAGGGATG AGACGATGAATGACCCGAGAGACCGCATAGAGATTGCTCAAACGCATGTCTTCTACAGGCCATCGCTACTGGGTCAGAATCCCTGA
AA sequence Show only first row Show all	>Lus10016364 pacid=23161915 polypeptide=Lus10016364 locus=Lus10016364.g ID=Lus10016364.BGIv1.0 annot-version=v1.0 MVENTEAADHTVYPNGNGAILEQKLDDLRHLFNKPDGDPLRIVGVGAGAWGSVFIALLQDSYGHLRDKVLIRIWRRPGRAVDRATAEHLFEVINSREDVL RRLIRRCAYLKYVEARLGDRTLYADEILKDGFCLNMIDTPLSPLKVVSNLQEAVWDADIVINGLPSTETREVFEEISRFWKERRTAPVIISLAKGVEAEL GTEPRIITPTQLINRATGVPIENILYLGGPNIASEIYHKEYANARICGSEKWRKPLAKFLRQPHFIVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNES ATSKSVYFAHCTSEMIFITHLLAKEPERLAGPLLADTYVTLLKGRNAWYGQQLAKGVLSLEMGDSIKGKGMIQGVSAVKAFYELLSQSSLSVLHPEEKKP VAPVELCPILKMLYRILIIREFPAEAILQALRDETMNDPRDRIEIAQTHVFYRPSLLGQNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07690			6-phosphogluconate dehydrogena...		Lus10016364 [exp]	0	1
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10031816 [exp]	11.0	0.8708
AT4G00360		ATT1, CYP86A2	"cytochrome P450, family 86, s...		Lus10014768 [exp]	13.3	0.8518
AT5G40200		DEGP9	DegP protease 9 (.1)		Lus10014524 [exp]	16.1	0.8667
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Lus10001301 [exp]	34.5	0.8635
AT5G39550		ORTH1, VIM3	VARIANT IN METHYLATION 3, ORTH...		Lus10039127 [exp]	42.3	0.8575
AT3G51870			Mitochondrial substrate carrie...		Lus10004820 [exp]	43.0	0.8292
AT2G40550		ETG1	E2F target gene 1 (.1)		Lus10030540 [exp]	50.0	0.8511
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Lus10027832 [exp]	51.4	0.8446
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Lus10005061 [exp]	52.2	0.8464
AT5G49560			Putative methyltransferase fam...		Lus10014309 [exp]	54.5	0.8413

Compare expression of checked genes

Lus10016364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.