Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36540 85 / 5e-20 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G29760 76 / 6e-16 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G26190 67 / 6e-13 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019759 [exp] 293 / 5e-101 AT2G36540 174 / 1e-53 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10019760 [exp] 100 / 5e-26 AT2G36540 93 / 7e-23 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10017858 [exp] 87 / 1e-19 AT4G26190 224 / 8e-62 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10021147 [exp] 87 / 1e-19 AT4G26190 241 / 2e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10007989 [exp] 87 / 1e-19 AT4G26190 247 / 3e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10034676 [exp] 87 / 1e-19 AT4G26190 225 / 3e-62 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10032890 [exp] 85 / 1e-19 AT4G26190 214 / 7e-63 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10027135 [exp] 54 / 1e-08 AT3G29760 134 / 5e-36 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G244200 [exp] 138 / 3e-40 AT2G36540 190 / 4e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G244400 [exp] 119 / 1e-32 AT2G36540 169 / 1e-51 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.004G116400 [exp] 94 / 3e-22 AT4G26190 235 / 4e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.015G059000 [exp] 89 / 2e-20 AT4G26190 253 / 9e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Lus10016365 pacid=23161810 polypeptide=Lus10016365 locus=Lus10016365.g ID=Lus10016365.BGIv1.0 annot-version=v1.0 ATGGCAGAGGAAGAAAACCAGAGAGTCGCCAACCTGAAGCTCAAAGCTGTCGTGGACAGCAGCAGCGACGACGACCACGAAGATGTAGAAGACAAAGGAG GAGATCTCCCAACTGATCTACTCTCACTCGGGAACCTCACGCTTGGTCCCAAGAAGAAACTGCTGGTGATTCCAGTTGGTGGATTCCTCTGCCACAGAGT ATTCAAGTACCGGAAGAACAAATTCAGAATCCCCCGGGGTCGCATCCCAGATTCATCCACCGGAACCTTCAACGTTTATAAACGGCCTCACGTGGAAGAG TTCGTCAAGTTCTGCTTGGAAAGATTCGAAGTCGGAATCTGGTCGTCTTCCAAAGAGCATAACATGGATGATGCTCTGGTTTGTCTGTTTGGTCGTGACC TTCAGAAGAAGCTTTTGTTCAGCTGGGATCAGAATGAATGTACCAGAACAATGTTCGATTGTTTGGACAATAAGTACAAGCCAATCTTCCTCAAGGTCCT GCACGACGTATTTGAATCTCAGATTCTGAAGAAACAGAGTTTCATATGTTTGCATAGCTCATTATCGGACACCTTATCAGCCGTGTACTCGTCCAGGAAT ATTGCAGTGTTTGGCTACAGGTATGATGGTAGGTGTTAA
AA sequence Show only first row Show all	>Lus10016365 pacid=23161810 polypeptide=Lus10016365 locus=Lus10016365.g ID=Lus10016365.BGIv1.0 annot-version=v1.0 MAEEENQRVANLKLKAVVDSSSDDDHEDVEDKGGDLPTDLLSLGNLTLGPKKKLLVIPVGGFLCHRVFKYRKNKFRIPRGRIPDSSTGTFNVYKRPHVEE FVKFCLERFEVGIWSSSKEHNMDDALVCLFGRDLQKKLLFSWDQNECTRTMFDCLDNKYKPIFLKVLHDVFESQILKKQSFICLHSSLSDTLSAVYSSRN IAVFGYRYDGRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10016365 [exp]	0	1
AT5G46090			Protein of unknown function (D...		Lus10013971 [exp]	3.5	0.8183
					Lus10021139 [exp]	4.8	0.8869
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10012466 [exp]	5.7	0.8036
					Lus10030338 [exp]	6.5	0.7140
AT1G21150			Mitochondrial transcription te...		Lus10039174 [exp]	6.8	0.8783
					Lus10010327 [exp]	8.0	0.7684
AT1G59840		CCB4	cofactor assembly of complex C...		Lus10010732 [exp]	8.9	0.7906
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10023974 [exp]	11.0	0.7981
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027942 [exp]	11.8	0.7920
AT5G47180			Plant VAMP (vesicle-associated...		Lus10011004 [exp]	17.7	0.7932

Compare expression of checked genes

Lus10016365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.