Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43920 1350 / 0 DCL3, ATDCL3 dicer-like 3 (.1.2.3) AT1G01040 719 / 0 SIN1, EMB76, EMB60, CAF, ASU1, SUS1, DCL1, ATDCL1 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) AT5G20320 634 / 0 DCL4, ATDCL4 dicer-like 4 (.1.2) AT3G03300 587 / 0 ATDCL2, DCL2 dicer-like 2 (.1.2.3) AT3G20420 120 / 1e-28 RTL2, ATRTL2 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1) AT4G15417 116 / 2e-28 ATRTL1 RNAse II-like 1 (.1) AT5G45150 102 / 1e-21 RTL3 RNAse THREE-like protein 3 (.1) AT1G35530 56 / 3e-07 DEAD/DEAH box RNA helicase family protein (.1.2) AT2G33730 53 / 2e-06 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G42520 50 / 2e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019757 [exp] 2912 / 0 AT3G43920 1379 / 0.0 dicer-like 3 (.1.2.3) Lus10019588 [exp] 453 / 2e-136 AT5G20320 1152 / 0.0 dicer-like 4 (.1.2) Lus10005142 [exp] 447 / 5e-132 AT1G01040 2012 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10030177 [exp] 360 / 1e-107 AT1G01040 1138 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10030176 [exp] 348 / 4e-101 AT1G01040 972 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10036447 [exp] 323 / 3e-90 AT3G03300 1405 / 0.0 dicer-like 2 (.1.2.3) Lus10019587 [exp] 190 / 4e-51 AT5G20320 556 / 0.0 dicer-like 4 (.1.2) Lus10005141 [exp] 177 / 3e-48 AT1G01040 569 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10040013 [exp] 147 / 6e-38 AT5G20320 318 / 6e-98 dicer-like 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G047500 [exp] 1982 / 0 AT3G43920 1518 / 0.0 dicer-like 3 (.1.2.3) Potri.006G188800 [exp] 656 / 0 AT5G20320 1733 / 0.0 dicer-like 4 (.1.2) Potri.008G075900 [exp] 614 / 0 AT3G03300 1567 / 0.0 dicer-like 2 (.1.2.3) Potri.010G181400 [exp] 606 / 0 AT3G03300 1548 / 0.0 dicer-like 2 (.1.2.3) Potri.002G181400 [exp] 363 / 5e-102 AT1G01040 2835 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Potri.002G226700 [exp] 144 / 1e-37 AT4G15417 244 / 1e-80 RNAse II-like 1 (.1) Potri.011G086700 [exp] 115 / 1e-27 AT3G20420 356 / 9e-122 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1) Potri.006G218850 [exp] 84 / 3e-19 AT3G43920 79 / 4e-19 dicer-like 3 (.1.2.3) Potri.013G109600 [exp] 57 / 1e-07 AT1G35530 1234 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.012G045800 [exp] 54 / 1e-06 AT2G33730 994 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0539 [flax] [poplar] RNase_III PF00636 [flax] [poplar] Ribonuclease_3 Ribonuclease III domain CL0196 [flax] [poplar] DSRM PF03368 [flax] [poplar] Dicer_dimer Dicer dimerisation domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0638 [flax] [poplar] PAZ PF02170 [flax] [poplar] PAZ PAZ domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10016367 pacid=23161898 polypeptide=Lus10016367 locus=Lus10016367.g ID=Lus10016367.BGIv1.0 annot-version=v1.0 ATGTGCGACCCCGTTAACCCTCTCAAGAGAAGCCTTGACGAGATGATCAACCCTACCACTGATGTGGGGGACGTCGTTCCCCTCATCACCGCCGGTCAAA ATTCCGTCACCCAACCACCGGCTCCCCCCTCCTCCGGCGAGGACTTCACCCCCAGAAGTTATCAGTTGGACGTTTATGAGATTGCTAAGCAGAGGAACAC CATAGCTATGTTGGATACGGGTGCTGGCAAGACTATGATAGCTGTGATGTTGATCAGGGAGATTGGTCAGAAAATCAAGTCTTCTCCCAGCAAGAAATTG ATATTATTCTTGGCCCCCACCGTTCATCTTGTGAATCAGCAATATGAGGTGATCAAAGCTCACACCACTTTTGATGTGGGAGTGTACTTCGGCGCTAAGA GGGTGGATTCTTGGAACTTGAGTCACTGGCAGAAAGAAATTGATGAACATGATGTATTGGTCATGACACCACAGATACTCTTGGATGCTCTAAGAAATGC ATTCCTCAATCTGGAAATGGTATCCTTGGTGATATTTGACGAGTGTCATCGTGCTACGGGCAATCACCCTTATGTTAAGATAATGAAGGAGTTCTATGTG AATGGCAATGCAAAACCGAAGGTGTTTGGTATGACAGCATCACCTGTTGCTAAAAAGGGGGTATCTTCTTCTCGAGATTGTGAAGATCAGATGTCGGAAC TTGAGAGCATATTGGATTCTCAGATCTATACGATCAAAGACAGGGCTGAGATGGAAATATATGTTCCATCGGCAAAGGAAACTTGTAAATTCTACAATAA AGCTCGGTTTTGTGCTGCTGATCTTAAAGCTGAGATACAAAGATCTTGGTCCAAGTTTGATGGTATAATTGCAAATTTGCAAGGGTCAATGCAAACTGGT TGTAAAGATATGGAGGATAAAGTCAAGGAACTGAGAAGGCGATTGTCTAATGACCATGCAAAGATTGTGAACTGCCTAGAAGATCTTGGTCTTAAATGTG CTTATGAGGCTGGTGAAGTGTGTTTACAGAAATCTCCTAATTCTTTCCCGGAATGTGAAACGTATAGAGAAATTTCTCAGCAACGCAAAAACTTCCTTGA AGAAGTAGCATCCAAAATTGGGAAATCCTTGGCACCTGTAGATTCAGGTTATATGTCGCCAAAGCTATATGAACTTCTTCAGCTTTTCCTATCATTTGGC AGAGCTACAGAGGTACTGTGCCTCATATTTGTGGACAGAATAATCACCGCTAAAGTGATCGAGAGATTTGTGAGCAAAGTAGCAGTTTTGATGCACTTTG CTGTATCTTATTTAAGTGGAACCAGTACATCAGTTGATGCACTAGCACCTAAACTGCAGAGAGAAATCTTGGAAGCATTTCTCGCCGGCAAGGTAAATCT ATTATTTGCCACTGATGTGGTAGAGGAGGGTATTCATGTGCCAAAATGCTCCTGTGTTGTACGTTTTGACCTTCCTAAGACAGTACGCAGTTATGTACAG TCTCGGGGGAGAGCTCGTCAACATAATTCCACGTTTGTCACTATGCTTGAGAGGGGAAATGAGAAACAGAGGGATCAACTGTTTAATGTCATTAGAAGTG AGTGGTCTATGAGAGATACAGCTAGTAATCGAGACCCTGAATTTTGGACTGCAAAAACTTGTTCCCAAACTGAGTTGAAGGCTTATGTCGTAGACAGGAC TGGGGCTTTAGTTACTGCTGACTCCAGCATTAGCCTCTTAAACAAGTATTGTGAAAAGCTTCCCGGTGACAGAATCTACCCACCAAGGCCAACTTTTGAA TTTGAGCTTGTCGAAAAGGCTTACCGGTGTCACATAAAGTTACCACCTTCTGCCATATTCCAAATGCTAGCTGGTCCAGTTAGTAGAAATCAACAACTAG CTAAACAGCTAGCTTGCTTGGAAGCTTGCAAGAAGCTGCATCAGATGGGTGGTTTAGATGATCATCTTCTAGCAGCATCTGAAGAACCTTCATCATTCCC TCAAAAAAAGGAAGAGCCCTCATCAGAGAAACAGCTTATGCCGAAAAGTAGAAAAGCATCCGCAGGTGCAGGTAGTACAAAGAGGAAGGAGTTACATGGT ACAATTCGCATCCGTGCATTATCATGCAGCTCGGAAGGCAAACTTGATGGAGCTACTTTCTATTCCTACAAGTTTGACTTCTCCTGTAATGTTCCCAGCC ATATTTATTCCAGTTTTGTTCTTCTGACTGAAGCAATGCTTCATGATGATGTGGGGAACATTGAACTGGACCTTTATTTAGTCGGAAAGAGAGTTAAGGC CTCTGTTTATTCATGTGGGGAGCTGCATTTGAACAATGAACAGATCATAAAAGCAAAGTGCTTTCAGGGGCTTCTTTTCAATGGTCTGTTCGGAAGATTG TTCACTGGATCCAAAAAGAGTGCAACCCCAAGGGAGTTCTTACTTTCAGTTGAAACAGCACTTTGGAGTCCGTCATATATGTATCTTCTTCTACCTATTG AAACTTCTTGTGCCTCAAACACAGAAGCTTTGTCAGTAAATTGGTCAGGGATAAGTGCTTGCACTTCTGCTGTAACATTTATGACGAAAAACTCCTTGGG CGGTGATAGTTGTGACAGTGACAGCAGAGATCAATCAGTTCCAGAATCCAACGGCTCCAAGATATTCAACTTCGCTAATGTTTCAGAAGATATCAACAAT GTGATGAATATGGTTTTCTTGGCCGTTCACACAGGCAAGGTATATTCAATTGTTGAAGCCGTTGATGACATGTCTGCAGAGAGTCCTTTTGATGGAAATG ATGATAATGCAGCTGTCAAGTACTCAACCTTTGCTGACTATTACAACAGGAAATATGGAATCGTACTCAAGCATCCAAGACAGCCTATGTTGCGGTTAAA GCAAAGTCACAATCCACATAACCTTCTTATGGACTTCAATGATGAAGGTGAATCAAAAGGCAGCAGCATTGTGCAAAAACAGCGATTTTATGCTCATCTT CCCCCCGAGGTTATAATTGTCATAGATATTCCGAGCTCTGTTCTAAAATCTATGTACTTGCTTCCATCCATGATGCATCGTCTGGAGTGTCTGATGCTAG CAAGTCAACTTCGACAAGACATTGATTTTACGGCAGCAAACTTTCACATTTCGAGCTCACTGATTCTAGAAGCAATATCAACACGGAGATGTTGTGAGAA CTTCTCTTTTGAGCGACTGGAGTTGCTAGGGGATTCAGTTTTGAAGTATGCTGTTGGTTGCCATCTGTTCCTGAAGCATCCTGATCAACATGAAGGTCAA TTATCTGGTTCTCGATCACATTTGGTCTGCAACTCAACACTGCACAAATTCGGAATAGAACGCAAAATCCAGGAATATATACGGGATGGTGCATTCGACC CACGCCGTTGGGTTGCTCCAGGACAACAAACTTTGCGGCCAGTACCATGCAAATGTGGAATTGATACGTTAGAAGTTCCTTTGGATGCCAAATTTCAGTC GGAGGATTCAAAAATTAAAGTTGGAATCAGTTGTGATTTGGGACATAGATGGATGGGTTCTAAAACTGTGTCCGACTGTGTTGAAGCAATCATAGGAGCT TACTATGCGGCTGGTGGACTGGTGGCTGCACTGCATGTGATGAAGTGGATCGGTATTGACCTGGAACTCGATCCTCAGTCTGTTCTTCAAGCCATTAACA GTGCTCCCTCGCGAACTTCTATCCCAAGTGATATCGAGGTGACGAGCCTTGAATCAGCACTGGGTTACACATTTAATGCAAAGTTTCTCTTGTTGGAGGC GGTGACACATCCATCAATGAAGGAACAGGGAGAAAAGTATTGCTATCAGAGGCTTGAATATCTGGGGGACTCGGTTTTGGATTTGCTGATCACAAGACAT CTTTATGAAAACCACAAAAACCTAGATCCTGGCGAGTTAACAGATCTACGTTCGGCTTCCGTTAACAATGAGAGTTTTGCTCAAGTTGCTGTGAAACATA AGCTCCATACACATCTTCGACATTGTTCAACGTTACTTGAGAGCCAAATAACTGAATACATTAACTCTTCCGGGGGATCTACAGAAGGAACAACAACATC AGCAGCTGGCACAAAGGGCCCCAAGGCAATGATTATTCTGCATTCTGTACAGGCTCTTGGCGACCTGGTCGAAAGCATTGCTGGGGCGGTACTGGTGGAT ACTAACCTCAATTATGAGGAAGTCTGGAGAATATTCGAGCCTCTTCTATCTCCAATTGTGACACCAGACAAACTCGAGCTGCCTCCATATCGTGAGTTGG TTGAATTGTGTGGCTCTCTGGGATGTTTCACAAAGGAAGATTGTACGAACAAAGGGGATATGGTGCACGCTAAGCTTACCTTACAGCTCGATGATGCCCT CATAGTTGCAGAGGGGCATGATCAAAAGAAAAAGTATGCCAAAGGGAAAGCAGCTTCTCTACTGTTAAAGGAGCTTGAGAAAAGAGGGCACTCAAGGGCT GGTACAAAGAAGAGGAAGTATGAGACAGACTGTATTTCTGTATCTCATCCGACGGAAGGTCAGAGTGTAACAACCAAGGTCAAGATACAGAAGACTCGGG AAAATTTGCCTGCATTGACAGATGGAGCTCCTTCCATTCAAAGCACAGTGACTCCAGTCATCAAATCAATCAACACGACGAAAGGAGGACCTCGGAATAC TCTTTTCGATCTATGCAAGAGAGAACAATGGACATTGCCCACTTTTGAAACAACAGAAGAAAGATTCAGCACGCCAGTGGAAGTTGGTGACGACAACAAC AAAAGAAGTACGTTGAACACCTTCACAGCCAAAATCACGTTGAAAATACCGTTGTTCGGGGTGATCGAATGTGATGGCTTGGCCAGAGCAGATAAGAAGA GTGCTTACGACTCAGCAGCTTGGGTCATGCTTCATGAGCTTGAAACGAAGCAGCTACTTATCATCTCTGATCAATGA
AA sequence Show only first row Show all	>Lus10016367 pacid=23161898 polypeptide=Lus10016367 locus=Lus10016367.g ID=Lus10016367.BGIv1.0 annot-version=v1.0 MCDPVNPLKRSLDEMINPTTDVGDVVPLITAGQNSVTQPPAPPSSGEDFTPRSYQLDVYEIAKQRNTIAMLDTGAGKTMIAVMLIREIGQKIKSSPSKKL ILFLAPTVHLVNQQYEVIKAHTTFDVGVYFGAKRVDSWNLSHWQKEIDEHDVLVMTPQILLDALRNAFLNLEMVSLVIFDECHRATGNHPYVKIMKEFYV NGNAKPKVFGMTASPVAKKGVSSSRDCEDQMSELESILDSQIYTIKDRAEMEIYVPSAKETCKFYNKARFCAADLKAEIQRSWSKFDGIIANLQGSMQTG CKDMEDKVKELRRRLSNDHAKIVNCLEDLGLKCAYEAGEVCLQKSPNSFPECETYREISQQRKNFLEEVASKIGKSLAPVDSGYMSPKLYELLQLFLSFG RATEVLCLIFVDRIITAKVIERFVSKVAVLMHFAVSYLSGTSTSVDALAPKLQREILEAFLAGKVNLLFATDVVEEGIHVPKCSCVVRFDLPKTVRSYVQ SRGRARQHNSTFVTMLERGNEKQRDQLFNVIRSEWSMRDTASNRDPEFWTAKTCSQTELKAYVVDRTGALVTADSSISLLNKYCEKLPGDRIYPPRPTFE FELVEKAYRCHIKLPPSAIFQMLAGPVSRNQQLAKQLACLEACKKLHQMGGLDDHLLAASEEPSSFPQKKEEPSSEKQLMPKSRKASAGAGSTKRKELHG TIRIRALSCSSEGKLDGATFYSYKFDFSCNVPSHIYSSFVLLTEAMLHDDVGNIELDLYLVGKRVKASVYSCGELHLNNEQIIKAKCFQGLLFNGLFGRL FTGSKKSATPREFLLSVETALWSPSYMYLLLPIETSCASNTEALSVNWSGISACTSAVTFMTKNSLGGDSCDSDSRDQSVPESNGSKIFNFANVSEDINN VMNMVFLAVHTGKVYSIVEAVDDMSAESPFDGNDDNAAVKYSTFADYYNRKYGIVLKHPRQPMLRLKQSHNPHNLLMDFNDEGESKGSSIVQKQRFYAHL PPEVIIVIDIPSSVLKSMYLLPSMMHRLECLMLASQLRQDIDFTAANFHISSSLILEAISTRRCCENFSFERLELLGDSVLKYAVGCHLFLKHPDQHEGQ LSGSRSHLVCNSTLHKFGIERKIQEYIRDGAFDPRRWVAPGQQTLRPVPCKCGIDTLEVPLDAKFQSEDSKIKVGISCDLGHRWMGSKTVSDCVEAIIGA YYAAGGLVAALHVMKWIGIDLELDPQSVLQAINSAPSRTSIPSDIEVTSLESALGYTFNAKFLLLEAVTHPSMKEQGEKYCYQRLEYLGDSVLDLLITRH LYENHKNLDPGELTDLRSASVNNESFAQVAVKHKLHTHLRHCSTLLESQITEYINSSGGSTEGTTTSAAGTKGPKAMIILHSVQALGDLVESIAGAVLVD TNLNYEEVWRIFEPLLSPIVTPDKLELPPYRELVELCGSLGCFTKEDCTNKGDMVHAKLTLQLDDALIVAEGHDQKKKYAKGKAASLLLKELEKRGHSRA GTKKRKYETDCISVSHPTEGQSVTTKVKIQKTRENLPALTDGAPSIQSTVTPVIKSINTTKGGPRNTLFDLCKREQWTLPTFETTEERFSTPVEVGDDNN KRSTLNTFTAKITLKIPLFGVIECDGLARADKKSAYDSAAWVMLHELETKQLLIISDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10016367 [exp]	0	1
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10016332 [exp]	2.2	0.9448
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10019757 [exp]	2.8	0.9447
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10002748 [exp]	3.9	0.9371
AT5G52290		SHOC1	shortage in chiasmata 1 (.1)		Lus10038861 [exp]	4.5	0.9234
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Lus10042401 [exp]	5.2	0.9023
AT1G26370		RID1	RNA helicase family protein (....		Lus10036917 [exp]	6.1	0.8866
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10027350 [exp]	6.9	0.9237
AT1G18450		ATARP4	actin-related protein 4 (.1)		Lus10032484 [exp]	7.5	0.8971
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10014915 [exp]	9.5	0.9222
AT1G77270			unknown protein		Lus10038311 [exp]	11.0	0.9018

Compare expression of checked genes

Lus10016367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.