Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35040 86 / 7e-21 bZIP bZIP19 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G16770 81 / 3e-19 bZIP bZIP23 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G51960 76 / 2e-17 bZIP ATBZIP24 basic leucine zipper 24 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019756 [exp] 117 / 6e-35 AT4G35040 79 / 4e-19 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10014121 [exp] 87 / 1e-21 AT2G16770 265 / 8e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10027847 [exp] 84 / 7e-20 AT2G16770 295 / 1e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10005073 [exp] 83 / 1e-19 AT4G35040 294 / 2e-99 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10019788 [exp] 65 / 3e-13 AT2G16770 209 / 5e-68 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G134900 [exp] 88 / 7e-22 AT4G35040 291 / 2e-99 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.004G175200 [exp] 86 / 6e-21 AT4G35040 267 / 6e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.003G204400 [exp] 80 / 6e-19 AT2G16770 151 / 5e-45 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.001G020200 [exp] 74 / 2e-16 AT2G16770 120 / 9e-33 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF07716 [flax] [poplar] bZIP_2 Basic region leucine zipper
Representative CDS sequence Show only first row Show all	>Lus10016368 pacid=23161831 polypeptide=Lus10016368 locus=Lus10016368.g ID=Lus10016368.BGIv1.0 annot-version=v1.0 ATGGTTGAGATTAGTAGAACCTGCATCCACACTCACACTTGCAACCCTCCAGGTCCTAATGCAACCACTCATTCACACACTTGCTGCCACACACATACCA AAGTACTGATAATTCCACCTGGAACAACGTTAGAGAAACAGAACAGTACTACTTACAACCGCAATTCGAAGAAGACGACGAAGAGGAGGCCATTGGGAAA CAGGGTGGCAGTGAGGAAATACCGCAAGAAGAAGAAGGCACACACAGCTTCCTTGGAGGAACAAGTGAAGAAGCTACGCGTGTTGAACCAGGAGCTGGTG ACGGAGCTGCAAAGGCAGGCCGTGTTGGAGTCCGAGGTTGTGAGGCTCAGAGGCTTGTTGGTTGATTTCAGAGTGAAGATTGATCATCTTGAGTTAGAAA GCTGTCCCTTCGGAAATGCGAGGTCAGATTAA
AA sequence Show only first row Show all	>Lus10016368 pacid=23161831 polypeptide=Lus10016368 locus=Lus10016368.g ID=Lus10016368.BGIv1.0 annot-version=v1.0 MVEISRTCIHTHTCNPPGPNATTHSHTCCHTHTKVLIIPPGTTLEKQNSTTYNRNSKKTTKRRPLGNRVAVRKYRKKKKAHTASLEEQVKKLRVLNQELV TELQRQAVLESEVVRLRGLLVDFRVKIDHLELESCPFGNARSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Lus10016368 [exp]	0	1
AT4G31880			unknown protein		Lus10002307 [exp]	8.8	0.8121
AT1G06330			Heavy metal transport/detoxifi...		Lus10028331 [exp]	11.2	0.7821
AT5G51280			DEAD-box protein abstrakt, put...		Lus10012900 [exp]	12.5	0.8022
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006310 [exp]	13.1	0.8011
					Lus10009425 [exp]	14.1	0.7395
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10011662 [exp]	17.5	0.7972
AT4G38380			MATE efflux family protein (.1...		Lus10023944 [exp]	18.7	0.7770
AT4G18530			Protein of unknown function (D...		Lus10024473 [exp]	22.0	0.5452
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10035700 [exp]	24.1	0.7773
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Lus10003012 [exp]	27.0	0.7693

Compare expression of checked genes

Lus10016368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.