Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13800 483 / 1e-168 CRN1, PPH Co-regulated with NYE1, pheophytinase (.1.2) AT4G36530 89 / 3e-19 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G19850 84 / 2e-17 alpha/beta-Hydrolases superfamily protein (.1) AT5G38520 59 / 3e-09 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G25290 47 / 2e-05 DNA photolyases;DNA photolyases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019755 [exp] 812 / 0 AT5G13800 589 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Lus10005320 [exp] 536 / 0 AT5G13800 551 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Lus10028315 [exp] 97 / 1e-21 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10025172 [exp] 86 / 1e-17 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10041763 [exp] 77 / 5e-15 AT4G36530 484 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10003969 [exp] 64 / 1e-10 AT5G38520 426 / 2e-149 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031137 [exp] 57 / 3e-08 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10016051 [exp] 48 / 2e-05 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G054800 [exp] 518 / 0 AT5G13800 610 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Potri.005G121000 [exp] 93 / 1e-20 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G219700 [exp] 84 / 2e-17 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.019G063900 [exp] 68 / 2e-12 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.015G129500 [exp] 43 / 0.0006 AT4G25290 809 / 0.0 DNA photolyases;DNA photolyases (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016369 pacid=23161908 polypeptide=Lus10016369 locus=Lus10016369.g ID=Lus10016369.BGIv1.0 annot-version=v1.0 ATGGAAGTGATTCCCCTTAGTACTACTACCTCAAGGTTTCAAGTATTAAATCTGAGGTGGCAAGTGGTTAATAGAGACTCAAGTTCTTGTAGAAAGCCTC AAATTTCTCTTCCTAGATTAAAACACAAAAGTTGGGTTTCGATATCAGCTAGCATCAACGAGTTTGGCTTCCTTGGGGAACCAAAGAAGAAGTCCAACTC AAAGGTTTTGAGTGGGAAGACCGATAGCTATGTGATTGGAGAGGATGATAAACTGGGTAGTGTTGTACGAAAAGGTAAAGTCTTGATTCCAAGTTTACCA GATGAACCCAGCAGTGCTTCAGTAAGCAGTGGCTTCTGGGAATGGAAACCTAAGATGAACGTGCACTACGAGAGAGCTGGCTGTGAGAATCTGGAATCTC CACAGGTGCTGTTTCTTCCAGGTTTTGGGGTTGGTTCTTTTCATTATGAGAAGCAATTGAAGGATTTGGGTCGCCAGTATAGGGTATGGGCTGTTGATTT CTTGGGGCAAGGTTTGTCTTTGCCTATTGACAACCCCACTAATTCACTGTTGAGTCAAGAAGGTGGTGACTCTCCAATGTGGGGATTTGGAGATGAAGCT GAACCTTGGGCTAGTGAGCTTGTTTATTCTGTTGATCTATGGCGGGATCAAGTCCGCTACTTCGTAGAAGAGGTAATTGTCAAGTCGCCAGCATGGGCAA GAGTGTTCACCTGGTCAGGAACATTTCCTCTGCCTCCAAGGGTGAAAAAGATTATGCACTTCTTATGGCAGAAATTTAGCGATCCTAGAAGTATTGCGGA GATACTCAAACAAGTCTACGCAGATCATTCGACAGACGTAGAGAAGGTATTCTCTCGTATCGTGGAGATAGCTCAACACCCTGCAGCTGCTGCATCATTT ACCTCGATCATGTTTGCTCCGAGGGGAGAACTATCCTTCACCGAGGCTCTCTCCAGATGCAAAACCAGTGATATACCGATCTGTCTTGTGTACGGGAAAG AAGATCCTTGGGTGAACCCTATATGGGGCCACCTCGCGAAGCGTGAGGTCCCCCAGGCTCCATACTATGAGCTTAGCCCTGCCGGTCACTGCCCCCACGA CGAAGTTCCTGAGGTAGTGAACTACATCCTACGTGGGTGGATCAAGAACCTGGAATCGGGCGGTTCGTTTGATTTGCCTCTGCTTGATTATGGACAGGGC GTCGAGACTGACACTTCCAGGCGTCTCGAATTTGCGAGAGGAGGGTCGAAGAAGTCGGTGGACGTGAAGCTGGTAGGTTTTGGGCGGACTTTCTGGGAAC AGATGAGGTTTAACGTAAGCTCTCGGCTTGGGAAGTTGAAACCAGTTTCTTAG
AA sequence Show only first row Show all	>Lus10016369 pacid=23161908 polypeptide=Lus10016369 locus=Lus10016369.g ID=Lus10016369.BGIv1.0 annot-version=v1.0 MEVIPLSTTTSRFQVLNLRWQVVNRDSSSCRKPQISLPRLKHKSWVSISASINEFGFLGEPKKKSNSKVLSGKTDSYVIGEDDKLGSVVRKGKVLIPSLP DEPSSASVSSGFWEWKPKMNVHYERAGCENLESPQVLFLPGFGVGSFHYEKQLKDLGRQYRVWAVDFLGQGLSLPIDNPTNSLLSQEGGDSPMWGFGDEA EPWASELVYSVDLWRDQVRYFVEEVIVKSPAWARVFTWSGTFPLPPRVKKIMHFLWQKFSDPRSIAEILKQVYADHSTDVEKVFSRIVEIAQHPAAAASF TSIMFAPRGELSFTEALSRCKTSDIPICLVYGKEDPWVNPIWGHLAKREVPQAPYYELSPAGHCPHDEVPEVVNYILRGWIKNLESGGSFDLPLLDYGQG VETDTSRRLEFARGGSKKSVDVKLVGFGRTFWEQMRFNVSSRLGKLKPVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10016369 [exp]	0	1
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10019755 [exp]	1.0	0.9794
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10014587 [exp]	2.6	0.9667
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10036372 [exp]	3.7	0.9776
AT1G58030		CAT2	cationic amino acid transporte...		Lus10001334 [exp]	3.9	0.9678
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10027931 [exp]	5.5	0.9674
AT5G41800			Transmembrane amino acid trans...		Lus10003903 [exp]	5.6	0.9533
AT1G21000			PLATZ transcription factor fam...		Lus10000952 [exp]	5.7	0.9726
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Lus10011345 [exp]	5.7	0.9642
AT2G27480			Calcium-binding EF-hand family...		Lus10043389 [exp]	7.7	0.9637
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Lus10005886 [exp]	8.4	0.9643

Compare expression of checked genes

Lus10016369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.