Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43210 104 / 1e-27 Excinuclease ABC, C subunit, N-terminal (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G259216 [exp] 122 / 1e-34 AT5G43210 168 / 1e-53 Excinuclease ABC, C subunit, N-terminal (.1) Potri.001G259900 [exp] 122 / 1e-34 AT5G43210 168 / 1e-53 Excinuclease ABC, C subunit, N-terminal (.1) Potri.001G260600 [exp] 122 / 4e-34 AT5G43210 165 / 7e-52 Excinuclease ABC, C subunit, N-terminal (.1) Potri.001G260300 [exp] 99 / 2e-25 AT5G43210 132 / 1e-39 Excinuclease ABC, C subunit, N-terminal (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016370 pacid=23161868 polypeptide=Lus10016370 locus=Lus10016370.g ID=Lus10016370.BGIv1.0 annot-version=v1.0 ATGAAGTTACAACGTTCGAATTACCGCTCCTGTGACGAGAAATATCCTCAGAAATCAGAGGGGCCAGCCGGAGAAGATGTCAACGCGGCCGCTAACGAAC ACATTCCGGTCCGTCAAGCCTCGGAATCCCAAGCCGTCAAAGTTACCATCTTCCACCACTACAACGCCACCGCCTTCGCGAAAATCCCAAACAAATTCAT CCGAAGCAAATCCCAGCTCGATATCGCGATCATCCTGGTGCGTTTACCTCATCGCTTCGACCAACCCCCCAATCAAAACCTACGTCGGAGTCACCACCAA TTTCCCCCGCCGGTGAGTTTTGGATTCCTTTTCCACCTTTTTCTGCTCTTAGCCCTGTTATATTCAATTGAAATGCCAATCTGGGTCGCGCTCGATTACT GGAGAATCAGCTGGAATCGAATCGGGATGGGAAAGATCTTGATTGCTATGAATTGGTTAAAAGAACACAACGGTAAGCTCAAAGGTGGAGCCAAAGCAAC GCAATCAGGGAGGCCTTGGGTCTGTGCTTGCTTAATCAAAGGCTTCTGCGACCGTAGTGAAGCCTGCAAGTTTGAAACGAAATGGAAAGGATTGTCAAGG AAGTTGACTCGAAAGAGAGCAAGCGACGAGGTGGCGATGAATGAGAAGGCACTTGAATTGCTGAAGCACAGGGAGTTGGCGCTTGATAGAGTTAAGGATT CGTTGGATTGCAGTGGCTTGGATATCGTCTGGCATTTGTTGTAG
AA sequence Show only first row Show all	>Lus10016370 pacid=23161868 polypeptide=Lus10016370 locus=Lus10016370.g ID=Lus10016370.BGIv1.0 annot-version=v1.0 MKLQRSNYRSCDEKYPQKSEGPAGEDVNAAANEHIPVRQASESQAVKVTIFHHYNATAFAKIPNKFIRSKSQLDIAIILVRLPHRFDQPPNQNLRRSHHQ FPPPVSFGFLFHLFLLLALLYSIEMPIWVALDYWRISWNRIGMGKILIAMNWLKEHNGKLKGGAKATQSGRPWVCACLIKGFCDRSEACKFETKWKGLSR KLTRKRASDEVAMNEKALELLKHRELALDRVKDSLDCSGLDIVWHLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43210			Excinuclease ABC, C subunit, N...		Lus10016370 [exp]	0	1
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10001012 [exp]	8.0	0.8732
AT5G66040		STR16	sulfurtransferase protein 16 (...		Lus10012566 [exp]	8.9	0.8730
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Lus10035438 [exp]	15.1	0.8291
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10037262 [exp]	16.7	0.8631
AT5G06260			TLD-domain containing nucleola...		Lus10016984 [exp]	23.2	0.8423
AT5G56040			Leucine-rich receptor-like pro...		Lus10005847 [exp]	31.3	0.8104
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10030154 [exp]	33.2	0.8616
AT2G03070		MED8	mediator subunit 8 (.1)		Lus10035721 [exp]	39.8	0.8385
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10023647 [exp]	41.7	0.8572
AT1G69870		NRT1.7	nitrate transporter 1.7 (.1)		Lus10037221 [exp]	49.9	0.8362

Compare expression of checked genes

Lus10016370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.