Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51990 399 / 5e-137 Protein kinase superfamily protein (.1) AT1G28390 309 / 3e-100 Protein kinase superfamily protein (.1.2) AT3G59420 238 / 2e-69 ACR4 crinkly4 (.1) AT5G23170 225 / 2e-69 Protein kinase superfamily protein (.1) AT4G32000 198 / 2e-58 Protein kinase superfamily protein (.1.2) AT3G58690 196 / 8e-58 Protein kinase superfamily protein (.1) AT3G09780 195 / 2e-54 CCR1, ATCRR1 CRINKLY4 related 1 (.1) AT5G38560 192 / 4e-54 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G49270 191 / 2e-53 AtPERK7 proline-rich extensin-like receptor kinase 7, Protein kinase superfamily protein (.1) AT5G47850 191 / 5e-53 CCR4 CRINKLY4 related 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019753 [exp] 441 / 5e-155 AT3G51990 174 / 1e-52 Protein kinase superfamily protein (.1) Lus10039770 [exp] 318 / 2e-103 AT1G28390 379 / 2e-127 Protein kinase superfamily protein (.1.2) Lus10000764 [exp] 238 / 2e-69 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10015956 [exp] 226 / 4e-65 AT3G59420 1258 / 0.0 crinkly4 (.1) Lus10029948 [exp] 200 / 4e-58 AT1G54820 469 / 1e-162 Protein kinase superfamily protein (.1) Lus10004461 [exp] 197 / 7e-57 AT1G54820 465 / 4e-161 Protein kinase superfamily protein (.1) Lus10034082 [exp] 200 / 2e-56 AT5G38560 700 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10003066 [exp] 197 / 1e-55 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10040467 [exp] 192 / 7e-55 AT4G34440 501 / 7e-172 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G055200 [exp] 617 / 0 AT3G51990 409 / 7e-141 Protein kinase superfamily protein (.1) Potri.001G260800 [exp] 600 / 0 AT3G51990 419 / 5e-146 Protein kinase superfamily protein (.1) Potri.005G158600 [exp] 353 / 3e-117 AT1G28390 397 / 3e-134 Protein kinase superfamily protein (.1.2) Potri.004G221800 [exp] 259 / 3e-82 AT5G23170 273 / 1e-89 Protein kinase superfamily protein (.1) Potri.003G010300 [exp] 258 / 5e-82 AT5G23170 270 / 3e-88 Protein kinase superfamily protein (.1) Potri.017G029900 [exp] 241 / 1e-70 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.007G128400 [exp] 240 / 3e-70 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.003G179500 [exp] 211 / 2e-63 AT2G25220 424 / 2e-147 Protein kinase superfamily protein (.1.2) Potri.001G048500 [exp] 206 / 8e-61 AT2G25220 465 / 1e-162 Protein kinase superfamily protein (.1.2) Potri.014G143100 [exp] 198 / 1e-58 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10016371 pacid=23161889 polypeptide=Lus10016371 locus=Lus10016371.g ID=Lus10016371.BGIv1.0 annot-version=v1.0 ATGGGCTACCTTTCCTGCAACGCAGAATCCGCTATTGCCGTCTCCACTCCATCCACTCCTCCTCTTTCCACCGCCGCCGCCGCTTCATCTCTTCTCCACA ACAAGCAGCAAAAACCAATCAAGATCCAGCAGTTCCACTACAGCGACCTCGAGGCAGCAACCAACGGTTTCTCCGACCAGAAGCTGCTCGGGAGAGGCAG CCATGGATGCGTCTACAAGGCTGTTCTCCGCGGCCGCCGCGTCGTTGCCGTCAAGAAGCCATCCAAGCGCTTCGAGTCCGGACCGCAGCACCAGAATCAG CAGCAGGAGGTCGACAACGAGCTCGAGATCCTGTCCAAGATCCACAGCCCCGGGTTGGTGAATTTGTTAGGGTTTGCTAATAATGAATCCAAAGATAGGT TGCTTGTTGTTGAGTTTATGAGCAATGGCACTTTGTACGATGTTCTTCACTCGGATTCTTCCGGTAGGGTTCTTAATTGGGGGCGGAGGATTAGAATGGC TTTACAGATTGCTAAAGCGGTCGACACTCTGCATTCTCACAATCCGCCTATTATCCACAGAGATATCAAATCCGCAAATGTTTTAATTGACAGGAATTCC AATGCTAGGTTAGGCGATTTTGGGCTGGCGATAAGGTGCGGCGCTGATGATGATTGTAGGCTTAGATCAACTCCACCTGCTGGAACAATGGGGTATCTCG ATCCTTGCTACGTCACGCCCGATAACTTGAGCACCAAAACTGATGTTTTCAGCTTTGGGATTCTGTTGCTGGAGATTATCAGTGGGAGGAAGGCTATCGA TGTGGATCATTCCCCTGCTTCCATTGTCGATTGGGCGATCCCTCTGTTGAAAAGAGGGAAGCTTGGTCTTATCTACGATCCGAGGATTCCGTTGCTCAAG GACCCATTGATCAAGAGGCAGTTGGTTCTGATTGCTTCCAAATGTGTTAGGTCTTGCAGGGAGAGGAGGCCGTCTATGAAGGAAGTTGTTGACTGGTTGA ATGCATTGAGCAAGCTGGTTCCCCTCCATTCGTGGAACGGGTTCAACAATCCCTGTATGATGGTCGAGACCATGGGGCGTCCTGTTGAATTGAGGAATGG CGAATTTGAATTGAGAACGGTAAAGGATTCGAGAAGGGTGTTCTCGGATTTGGGGTCGAGAAGCAGTTTGATCGACCTCATGGCTGGTGGTGAGTCTGAT TCGATGAGACAACCCTCGAGCCGGTTTTCGCGTTCTATATTCGGTAGTGCAAGATATGTTGCAGGAGGAGGAAGAAGAACACAATCCAAGACTGTGAGTA GTAGTAGTAGTGACAACAAAGTTGTTTCTTGTCTGCGGAGAAACAAATCAGTCGGGAATGCTTTGGAGTTCGTCTCTGAAACAAAAGAGAAAGCTCCTCC AGCTGCTCGTTCGAGATTTAGTGGTGAAAGGTTGGTAAGCTCTTCCTGA
AA sequence Show only first row Show all	>Lus10016371 pacid=23161889 polypeptide=Lus10016371 locus=Lus10016371.g ID=Lus10016371.BGIv1.0 annot-version=v1.0 MGYLSCNAESAIAVSTPSTPPLSTAAAASSLLHNKQQKPIKIQQFHYSDLEAATNGFSDQKLLGRGSHGCVYKAVLRGRRVVAVKKPSKRFESGPQHQNQ QQEVDNELEILSKIHSPGLVNLLGFANNESKDRLLVVEFMSNGTLYDVLHSDSSGRVLNWGRRIRMALQIAKAVDTLHSHNPPIIHRDIKSANVLIDRNS NARLGDFGLAIRCGADDDCRLRSTPPAGTMGYLDPCYVTPDNLSTKTDVFSFGILLLEIISGRKAIDVDHSPASIVDWAIPLLKRGKLGLIYDPRIPLLK DPLIKRQLVLIASKCVRSCRERRPSMKEVVDWLNALSKLVPLHSWNGFNNPCMMVETMGRPVELRNGEFELRTVKDSRRVFSDLGSRSSLIDLMAGGESD SMRQPSSRFSRSIFGSARYVAGGGRRTQSKTVSSSSSDNKVVSCLRRNKSVGNALEFVSETKEKAPPAARSRFSGERLVSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51990			Protein kinase superfamily pro...		Lus10016371 [exp]	0	1
AT3G51990			Protein kinase superfamily pro...		Lus10019753 [exp]	2.2	0.8869
AT3G53380			Concanavalin A-like lectin pro...		Lus10026493 [exp]	8.7	0.8335
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10017304 [exp]	18.4	0.8457
AT3G28420			Putative membrane lipoprotein ...		Lus10039459 [exp]	24.5	0.8020
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Lus10029163 [exp]	34.4	0.7501
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10017926 [exp]	39.8	0.8205
AT1G12330			unknown protein		Lus10004335 [exp]	40.2	0.7611
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10015069 [exp]	46.1	0.8195
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10007474 [exp]	48.7	0.8163
AT3G28420			Putative membrane lipoprotein ...		Lus10005837 [exp]	51.2	0.8058

Compare expression of checked genes

Lus10016371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.