Plant FIBer expression Database

Lus10016372 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G09230 226 / 2e-68 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
AT4G12640 48 / 1e-05 RNA recognition motif (RRM)-containing protein (.1)
AT1G11650 44 / 0.0003 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019754
[exp]
676 / 0 AT1G09230 476 / 6e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Lus10002063
[exp]
44 / 0.0002 AT4G27000 275 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G054300
[exp]
454 / 2e-156 AT1G09230 253 / 3e-79 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Potri.019G031700
[exp]
312 / 6e-103 AT1G09230 273 / 2e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Potri.011G138400
[exp]
42 / 0.0006 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0221 RRM PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence
>Lus10016372 pacid=23161814 polypeptide=Lus10016372 locus=Lus10016372.g ID=Lus10016372.BGIv1.0 annot-version=v1.0
ATGGAGCACTCTGGGTCTCAAGCCATGCAAGTGAAGATAGAAACATCACAGAATGATCCACCGGTAGCTACACTCTTAGTTCGTCATCTTCCTGAGGGCA
TCCCTCACCATACGCTTTCCCGTCTCTTCTCTCACTACGGCGCTCACTCGGTTCGCCCCTGCACTGCCGGAAGATTGAGGAACTGTGCTTTTGTTGATTT
CAAGAATGATGCAGTGGCTTATCAAGCACAGCGCCAGTTGAATGGGATTAGGTTTCTTGGCAAAGTATTAGCAGTTGAGAGAGCTAACAAGAGAAATGAG
GAGCACAGAGGTAAACAAAGCGATGATCTAGCGAGGAAGGACAACTTTCTTCTTCCAATGTCCAGAGCGGAGGATGCTCACACGACAGAAAGAGACTTTA
ATGTGAACTCTAAACCAGGAGGATCCTTTCAGGGCAATGAGCCAATTGCTCCAAAACTTGGAGTAGACTATCCATTTCCTCCTGACTTGGAGTATGCCTA
CCCGCCACCTGATGGAAACATACTGACTAATATCGTCAATGCCCTCATTGCGGTTCCTCACTTTTATACTCAGGTGGTTTCCAAGATTGCATACCATGTT
TTTCTTTTGAGCTGGAATGTGCTGATTCTAGAAGTGTTGCATTTGATGAACAAAATGAACATTCCAGCTCCATTTCGCATGGCATTGCCAACTCCGCCTT
TACCTCCTTCTGAATCAGCAACAGCACCGCCACCACCTCCGCTTGTTGAATCGAATCGCCAATCTGCAGATGCATCTAGTAGTGATGAGTCTGAATTGGA
GACTTCTGAAGAGGATGTAGATAACGAAGACACTGCTCATGGAACCACCGTGAAGCCTCGTCGAAAGCGCAGAAGAAAAGAGCCAATTGTGGGACCTGCA
GTTGATAAACAAGTGGTACACGAGGCCGTGGGATTGAAACATGCCTCCTTGCTCCCAAAGGAAATTCCTGTCATAAAGAAGAAAAACCCTATGTTACAGA
TCAAAATTGTCCCAAAAGAAGTTCAGAAAGAGAACAAAGATAGTGGTGTTGAAGCTGAATCTATGGAGGCAGAGATTCAAACTCCAAATGATAAAGCCTT
TGCTTCTCCACAAGAAATACGGAGTAATAAGCTGGCACCTGAGGAAATCCTGTCACTGCCAAAGTTCAAGGTACTTGGAACTTTTGCACGTGGCTTCCTT
TTGAAGAAAACACAGCTTACATTTCACTCTCATTCTTTGACTTGCAAAGTTTGGTTTCTAGTACAGTTTGGTCTTCCTTTTACATATGCTGCAGGGTCAA
TATTTGGGAGCACTGAAGCAGCTAAAGCTGGTCTTAACGTTAAGTTGATGCAGGAGGGGAGAATGAGGGGCCAGGCGTTCGTCACATTCCCATCAGTCGA
ACTTGCCCAGCAGGGTCTGAATCTAGTCAACGGTTACATGTTCAAGGGGAAGCCGATGATCGTTCAGTTCGGGCGCAATCCTTCAGCTGGGCGACAAGAC
GAATAG
AA sequence
>Lus10016372 pacid=23161814 polypeptide=Lus10016372 locus=Lus10016372.g ID=Lus10016372.BGIv1.0 annot-version=v1.0
MEHSGSQAMQVKIETSQNDPPVATLLVRHLPEGIPHHTLSRLFSHYGAHSVRPCTAGRLRNCAFVDFKNDAVAYQAQRQLNGIRFLGKVLAVERANKRNE
EHRGKQSDDLARKDNFLLPMSRAEDAHTTERDFNVNSKPGGSFQGNEPIAPKLGVDYPFPPDLEYAYPPPDGNILTNIVNALIAVPHFYTQVVSKIAYHV
FLLSWNVLILEVLHLMNKMNIPAPFRMALPTPPLPPSESATAPPPPPLVESNRQSADASSSDESELETSEEDVDNEDTAHGTTVKPRRKRRRKEPIVGPA
VDKQVVHEAVGLKHASLLPKEIPVIKKKNPMLQIKIVPKEVQKENKDSGVEAESMEAEIQTPNDKAFASPQEIRSNKLAPEEILSLPKFKVLGTFARGFL
LKKTQLTFHSHSLTCKVWFLVQFGLPFTYAAGSIFGSTEAAKAGLNVKLMQEGRMRGQAFVTFPSVELAQQGLNLVNGYMFKGKPMIVQFGRNPSAGRQD
E

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G09230 RNA-binding (RRM/RBD/RNP motif... Lus10016372
[exp]
0 1
AT3G52210 S-adenosyl-L-methionine-depend... Lus10038644
[exp]
1.4 0.8854
AT3G52210 S-adenosyl-L-methionine-depend... Lus10037917
[exp]
3.5 0.8382
AT2G19170 SLP3 subtilisin-like serine proteas... Lus10011018
[exp]
6.7 0.7637
AT5G20320 DCL4, ATDCL4 dicer-like 4 (.1.2) Lus10019587
[exp]
8.8 0.7722
AT5G22220 E2F_DP ATE2FB, E2F1 E2F transcription factor 1 (.2... Lus10013321
[exp]
9.5 0.8117
AT3G27930 unknown protein Lus10008782
[exp]
9.5 0.7977
AT4G24970 Histidine kinase-, DNA gyrase ... Lus10016745
[exp]
13.0 0.8077
AT2G03510 SPFH/Band 7/PHB domain-contain... Lus10037073
[exp]
17.3 0.7730
AT2G01130 DEA(D/H)-box RNA helicase fami... Lus10007938
[exp]
17.4 0.7879
AT5G35360 CAC2 acetyl Co-enzyme a carboxylase... Lus10042901
[exp]
18.5 0.7883

Lus10016372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.