Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63460 1238 / 0 EMB2221 transducin family protein / WD-40 repeat family protein (.1.2.3) AT1G18830 744 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT4G35050 74 / 2e-13 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT2G16780 69 / 7e-12 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT5G58230 68 / 2e-11 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 59 / 2e-08 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT4G33270 58 / 3e-08 AtCDC20.1, CDC20.1 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) AT4G33260 58 / 3e-08 AtCDC20.2, CDC20.2 cell division cycle 20.2, Transducin family protein / WD-40 repeat family protein (.1.2) AT1G11160 57 / 6e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 57 / 8e-08 TAF5 TBP-associated factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019752 [exp] 1778 / 0 AT3G63460 1147 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10039578 [exp] 1740 / 0 AT3G63460 1380 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10005323 [exp] 1134 / 0 AT3G63460 885 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10005322 [exp] 608 / 0 AT3G63460 473 / 2e-156 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10016374 [exp] 217 / 8e-66 AT3G63460 181 / 4e-54 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10019751 [exp] 214 / 5e-65 AT3G63460 181 / 2e-54 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10027848 [exp] 70 / 6e-12 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10005074 [exp] 68 / 2e-11 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10020917 [exp] 67 / 5e-11 AT5G58230 696 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G055400 [exp] 1480 / 0 AT3G63460 1351 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Potri.001G260900 [exp] 1458 / 0 AT3G63460 1347 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Potri.004G175300 [exp] 71 / 2e-12 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.009G135100 [exp] 70 / 3e-12 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.002G216200 [exp] 68 / 2e-11 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G179700 [exp] 67 / 4e-11 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G144400 [exp] 62 / 2e-09 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.007G050100 [exp] 58 / 3e-08 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.019G096900 [exp] 55 / 2e-07 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G026800 [exp] 52 / 3e-06 AT5G13480 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10016373 pacid=23161812 polypeptide=Lus10016373 locus=Lus10016373.g ID=Lus10016373.BGIv1.0 annot-version=v1.0 ATGGCGTGTATCAAGTCCGTTAACAGATCGGCGTCGGTTGCCCTGGCGCCGGACGCTCCTTATTTGGCCGCCGGGACGATGGCCGGCGCGGTGGATCTGT CGTTCAGCTCCTCGGCCAACATCGAGATTTTCAAGCTCGATTTTCAGTCGGATGATCCTGATCTCCCGTTGGTTGGGGAGTCGCAGAGCACCGAGAGATT TAACCGTCTCGCTTGGGGGAAAAACGGATCCGGCTCCGAGCAGTATGGTATGGGACTCATTGCAGGTGGCCTTGTGGATGGGACTATTGGTATCTGGAAT CCATCAGCGTTGATCCGTCCTGAATCTAAAGATGGAGCATTTGTTGCTTCTCTGTCAAATCATAAAGGCCCTGTCCGTGGGCTTGCATTCAATTCCTTCA CTCCAAATTTACTGGCATCGGGTGCTGATGATGGTGAGATTTGCATCTGGGACTTAGCCTCGCCTGGGGAACCTTCCCATTTTCCACCTCTGAAGGGTGC TGCCTCACAAGGTGAAATCTCCTACGTTTCTTGGAATAACAAGGTCCAACACATACTGGCATCTACATCACATAATGGGATCACTGTGGTTTGGGACTTG AAGAAGCAGAAACAAGTTATATCTGTTTCAGATTCAACGAGTAGGCGGTCCTCTGTTTTGCAGTGGCATCCTGATGTTGCCACTCAGCTATTTGTTGCAT CAGATGATGACAGTTCTCCTACTTTGAAGCTATGGGATATGCGGAATATTCTGAAACCTGTCAATGAGTTGGTTGGACACACCAAAGGAGTGATTGCTAT GGCATGGTGCCCCAATGACAGCTCGTATTTGCTTACTTGTGCTAAAGATAATCGTACTATCTGCTGGAACACTGTTACTGGAGAGATTGTTTGTGAGTTA CCGTCAGGCAACAATTGGAACTTTGATGTGCATTGGTACTCTAAGATACCAGGAGTAATTGCTGCATCTTCATTTGATGGAAAGATTGGGCTTTACAATA TTGAGGGATGCAGTCATTATGGGATTGGAGAGGCCGATTTTGGAGCAGTAAAATTAAAAGCCCCAAAGTGGTATAAACGCCCTGCTGGTGTGTCCTTTGG CTTTGGAGGGAAGCTCTTGTCATTTCATCCGAAGTCATCCACTACAGGGGGTTCAGAGGTTCTTCTGCACAATCTGGTGACGGAACAATCCTTAGTCAGT CGGTCATCTGGATTTGAATCTGCAATGAACAATGGGGAGAAATCCTCGCTGAAGTCCTTATGTGAAAGAAAATCTCAAGAGTCTGAGTCGGAGGATGAGC GACAGACATGGGGTTTTCTCAAGGTTATGTTTGAAGAAGATGGAACTGCAAGGTCAAAGATGCTTAACCATCTTGGTTTTAGTTTGCCTGTTGAAGAAAA ACCTGCAGTTGTCGATGATCTTAGCCAGGAAATCAATGCTCTTCAACTGGCTGATGTTGCGACTGATAAGGTGGGATTTGAAAAAGAGAAAGAGTCTGGC ATGTTTGCGGGAGATGATGACGAAGATTTCTTTAACAATCTTCCGAGCCCAAAAGTCGATACACCTGTTTCAGTTGCAGCTGAGGTCGTGTCTCCTCACA TTGGGGAAGAAGACAGACCAGAACTTGATGTGCTGGATGAGAGTGTTGATGCATCATTTGATGATGATATTCAGCGTGCTTTGGTTGTGGGAGACTACAA GGGGGCAGTTGCACAGTGCATGTCTGCAAATAAGAAGGATCATGCTTTGCTTATTGCACATCTTGGTGGACCTGTTTTGTGGGAGAAAACCCGTGATCAG TGTCTCAAAACGAACCGGTCACCTTACATGAAGATTGTTTCTGCAATGGTGAATAATGACCTCCTAAGTCTTGTAAATACAAGGCCTCTGAAATATTGGA AAGAAACACTTGCTCTTCTATGCACATTTGCTCAAAATGAGGAATGGAGCATGCTGTGCGACGTGCTTGCGTCAAAACTATTGCGCGCTGGGAATACGTT GGCTGCGACGCTTTGTTACATATGTGCCGGGAATATAGACAAGACTGTTGAAATTTGGTCCAGAAGTTTGTCGTGTGACAATGAAGGGAAATCTTATGTT GACCTTCTTCAGGATTTGATGGAAAAGACCATTGTGTTTGCTTTGGCTAGCGGACAAAAGCGGTATAGTGCATCTCTGTGCAAGCTTGTTGAGAAATATG CTGAGATTTTGGCAAGTCAGGGGCTTTTAACAACTGCTATAGAGTACCTGAAACTCTTGGGTTCCGATGAATTGTCTCCTGAACTTTCTATCTTAAGAGA TCGCATTGCACTGTCCACAGAGCCTGAGGAACAGACAACTGCTGCTTATGACAATTCTCAATATCAGACTCAACAATCCAGTTTTAGTGCGGCTGATGCA TCTAACTCCTACTATCCGGAAACAACACAACCAAATTTGCAGCTCCGTGGTGTTCCTAACTCTGCATACGGAGACGGTTATCAACAGAATCTTGGTTCTT TGTACGGAGGAGGATATGGAGCTACGCCATATCAACCTGCTGTCCAGGCTGCTCCTTACCAGCCTGCTGTACCTTCTCAAATGTTTGTTCCAGCTCCAGC CCCAGCGCCTCAGATTCCTCAGAGTTTCGCCCCAGCTCCTTCTAGCACTCAACAAGCTGTAAGGACTTTTGTTCCTTCAAGCGCTCCAATCGTAAGAAAT GCAGATCAGTACCAGCAGCAGCAGCAGCAGCAACCTACATTGGGATCTCAGTTGTATTCCGGGGGTTCAAATCCTACATTCCAACCTCTGCAACCTCACA CGCCTCCTCATGGGCCGATCGGAGCTCCTATAGGAATGCCGAATGTCCCGGGATTTAGACCTGAAGCAAATTCTATCCATAGACCAATCAACAATTCGTT TCAACCATCTACCCCTAGTCAGTCGCCACCCGTCCAACCAGCTGCAGCACCTGCTCCACCTCCTACTGTACAAACGGCGGATACTTCAAAAGTTCCTGAA ATGGGTTTTACCAAAAGGCTCTTACCAAACCCTGATTTGCTTGTCTTATATGCAACTGCTGCAGCTCACCACAAGCCAGTTGTTGCAACATTGACGAGGC TTTTCAACGAGACGTCGGAAGTTTTGGGAGGTTCGCGAGCTATGGGGGCGAAGAAGAGAGAAGTAGAAGACAATTCGAAGAAAATCGGTGCCCTGTTTGC TAAACTCAACAGTGGGGATATCTCGAAAAACGCGTCGGACAAGCTTATTCAGCTGTGCCAAGCACTGGAGAAAGGCGACTTCGTGTTGCTGACGACTAGC GAGTGGGACGAATGCAACTTCTGGTTAGCCACCCTGAAACGAATGATCAAGACCCGACAGGTTGCTGGTGTAAGAAGTTAG
AA sequence Show only first row Show all	>Lus10016373 pacid=23161812 polypeptide=Lus10016373 locus=Lus10016373.g ID=Lus10016373.BGIv1.0 annot-version=v1.0 MACIKSVNRSASVALAPDAPYLAAGTMAGAVDLSFSSSANIEIFKLDFQSDDPDLPLVGESQSTERFNRLAWGKNGSGSEQYGMGLIAGGLVDGTIGIWN PSALIRPESKDGAFVASLSNHKGPVRGLAFNSFTPNLLASGADDGEICIWDLASPGEPSHFPPLKGAASQGEISYVSWNNKVQHILASTSHNGITVVWDL KKQKQVISVSDSTSRRSSVLQWHPDVATQLFVASDDDSSPTLKLWDMRNILKPVNELVGHTKGVIAMAWCPNDSSYLLTCAKDNRTICWNTVTGEIVCEL PSGNNWNFDVHWYSKIPGVIAASSFDGKIGLYNIEGCSHYGIGEADFGAVKLKAPKWYKRPAGVSFGFGGKLLSFHPKSSTTGGSEVLLHNLVTEQSLVS RSSGFESAMNNGEKSSLKSLCERKSQESESEDERQTWGFLKVMFEEDGTARSKMLNHLGFSLPVEEKPAVVDDLSQEINALQLADVATDKVGFEKEKESG MFAGDDDEDFFNNLPSPKVDTPVSVAAEVVSPHIGEEDRPELDVLDESVDASFDDDIQRALVVGDYKGAVAQCMSANKKDHALLIAHLGGPVLWEKTRDQ CLKTNRSPYMKIVSAMVNNDLLSLVNTRPLKYWKETLALLCTFAQNEEWSMLCDVLASKLLRAGNTLAATLCYICAGNIDKTVEIWSRSLSCDNEGKSYV DLLQDLMEKTIVFALASGQKRYSASLCKLVEKYAEILASQGLLTTAIEYLKLLGSDELSPELSILRDRIALSTEPEEQTTAAYDNSQYQTQQSSFSAADA SNSYYPETTQPNLQLRGVPNSAYGDGYQQNLGSLYGGGYGATPYQPAVQAAPYQPAVPSQMFVPAPAPAPQIPQSFAPAPSSTQQAVRTFVPSSAPIVRN ADQYQQQQQQQPTLGSQLYSGGSNPTFQPLQPHTPPHGPIGAPIGMPNVPGFRPEANSIHRPINNSFQPSTPSQSPPVQPAAAPAPPPTVQTADTSKVPE MGFTKRLLPNPDLLVLYATAAAHHKPVVATLTRLFNETSEVLGGSRAMGAKKREVEDNSKKIGALFAKLNSGDISKNASDKLIQLCQALEKGDFVLLTTS EWDECNFWLATLKRMIKTRQVAGVRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63460		EMB2221	transducin family protein / WD...		Lus10016373 [exp]	0	1
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Lus10013101 [exp]	3.9	0.9395
AT1G35220			unknown protein		Lus10036487 [exp]	7.9	0.9335
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Lus10039172 [exp]	8.1	0.9165
AT2G45540			WD-40 repeat family protein / ...		Lus10015857 [exp]	8.1	0.9365
AT4G32640			Sec23/Sec24 protein transport ...		Lus10000939 [exp]	8.8	0.9326
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10009803 [exp]	10.0	0.9334
AT2G29620			unknown protein		Lus10009543 [exp]	10.7	0.9215
AT3G63460		EMB2221	transducin family protein / WD...		Lus10005323 [exp]	10.7	0.9327
AT5G24710			Transducin/WD40 repeat-like su...		Lus10040563 [exp]	11.4	0.9331
AT1G21630			Calcium-binding EF hand family...		Lus10016689 [exp]	14.1	0.9204

Compare expression of checked genes

Lus10016373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.