Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60910 323 / 4e-112 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G17365 179 / 7e-56 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G34360 87 / 4e-20 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G31740 87 / 3e-19 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G66680 54 / 2e-08 AR401 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019750 [exp] 433 / 2e-155 AT3G60910 394 / 3e-140 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016375 [exp] 206 / 7e-68 AT3G60910 164 / 7e-52 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016656 [exp] 89 / 1e-19 AT2G31740 895 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033577 [exp] 56 / 2e-08 AT1G66680 385 / 3e-132 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10017619 [exp] 49 / 2e-06 AT1G66680 471 / 1e-167 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G261000 [exp] 341 / 2e-119 AT3G60910 387 / 2e-137 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.009G055600 [exp] 314 / 6e-108 AT3G60910 378 / 1e-133 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G153200 [exp] 190 / 7e-60 AT3G17365 313 / 1e-108 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.004G150200 [exp] 100 / 8e-25 AT4G34360 385 / 1e-136 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G317700 [exp] 81 / 4e-17 AT2G31740 886 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G062400 [exp] 45 / 4e-05 AT1G66680 414 / 4e-145 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G165700 [exp] 41 / 0.0005 AT1G78140 407 / 1e-142 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10016376 pacid=23161830 polypeptide=Lus10016376 locus=Lus10016376.g ID=Lus10016376.BGIv1.0 annot-version=v1.0 ATGAGGGATGAGTCGAGCTTGAACACATACAACTATGGCGACGCACTGTATTGGGACGCTCGATATGTGGAAGAGAGTGGGAGTTTCGATTGGTATCAGC GTTACTCTTCCCTTCGTCCTTTCGTCCGCCACTACGCACCTACTTCATCTCCCGTCCTCATGGTTGGCTGTGGCAATGCCCTGATGTCAGAGGACATGGT GAAGGATGGGTATGAAGACATAATGAACATTGATATCTCCTCGGTGGCGATTGAAATGATGAGCAAAAAATATGAGTACATCCCTCAGCTCAAATACAAG AAAATGGATGTTCGAGATATGAGTGACTTCGCCGATGATTCATTTGGTAGTGTCATTGACAAGGGAACTCTAGATTCTTTAATGTGTGGCAGCGATGCCA TGATTAGTGCTGCTCAGATGCTTGGAGAAGTGAGCAGGCTGCTGAAGCCTGGAGGAACTTATATGTTGGTAACCATACGCTTATTGTTGAATTCTTACAG TTTGACTAGTGCAAGTTCGTATGCACTTCAGTCGTGTATGTTGACTTGCCCTTTCATGTTTGTACCAACAGATAACCTATGGCGATCCCAAGCAAGGCCA GGATTCCAAAAACCAGCAGCTAATCAATCATCAGCGCGGGCATTTTTGGAACCCGTACCAATCACAGAGAGTGGCTTACTTCCAGCAGACTATGTACTGG AAGATCCAGACTCACACTTCATCTACATATGCCAGAAAATGGACGGGGATTTGGAGTTGAACAATATCTCCTCCTACCCTTTGGCGGCTGATACCGCATT CTCATAG
AA sequence Show only first row Show all	>Lus10016376 pacid=23161830 polypeptide=Lus10016376 locus=Lus10016376.g ID=Lus10016376.BGIv1.0 annot-version=v1.0 MRDESSLNTYNYGDALYWDARYVEESGSFDWYQRYSSLRPFVRHYAPTSSPVLMVGCGNALMSEDMVKDGYEDIMNIDISSVAIEMMSKKYEYIPQLKYK KMDVRDMSDFADDSFGSVIDKGTLDSLMCGSDAMISAAQMLGEVSRLLKPGGTYMLVTIRLLLNSYSLTSASSYALQSCMLTCPFMFVPTDNLWRSQARP GFQKPAANQSSARAFLEPVPITESGLLPADYVLEDPDSHFIYICQKMDGDLELNNISSYPLAADTAFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60910			S-adenosyl-L-methionine-depend...		Lus10016376 [exp]	0	1
AT3G61860		ATRSP31, At-RS3...	arginine/serine-rich splicing ...		Lus10030226 [exp]	1.0	0.6882
AT1G16560			Per1-like family protein (.1.2...		Lus10027411 [exp]	7.5	0.6641
AT1G18210			Calcium-binding EF-hand family...		Lus10042008 [exp]	10.1	0.6828
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Lus10005231 [exp]	22.9	0.6733
AT3G05000			Transport protein particle (TR...		Lus10001721 [exp]	24.4	0.6209
AT1G04640		LIP2	lipoyltransferase 2 (.1.2)		Lus10031801 [exp]	24.5	0.6052
AT3G60910			S-adenosyl-L-methionine-depend...		Lus10016375 [exp]	36.1	0.5925
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10024318 [exp]	40.6	0.6227
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10043300 [exp]	40.9	0.6588
AT1G05780			Vacuolar ATPase assembly integ...		Lus10018982 [exp]	44.6	0.5966

Compare expression of checked genes

Lus10016376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.