Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63470 500 / 2e-174 SCPL40 serine carboxypeptidase-like 40 (.1) AT3G52000 408 / 2e-138 SCPL36 serine carboxypeptidase-like 36 (.1) AT3G52020 394 / 9e-133 SCPL39 serine carboxypeptidase-like 39 (.1) AT2G05850 386 / 8e-130 SCPL38 serine carboxypeptidase-like 38 (.1) AT3G52010 385 / 1e-129 SCPL37 serine carboxypeptidase-like 37 (.1) AT5G08260 384 / 6e-129 SCPL35 serine carboxypeptidase-like 35 (.1) AT4G30610 382 / 1e-128 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT3G02110 376 / 5e-126 SCPL25 serine carboxypeptidase-like 25 (.1) AT2G24000 363 / 3e-121 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT1G61130 358 / 2e-119 SCPL32 serine carboxypeptidase-like 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019747 [exp] 936 / 0 AT3G63470 502 / 4e-175 serine carboxypeptidase-like 40 (.1) Lus10019748 [exp] 862 / 0 AT3G63470 471 / 2e-161 serine carboxypeptidase-like 40 (.1) Lus10019749 [exp] 785 / 0 AT3G63470 478 / 1e-165 serine carboxypeptidase-like 40 (.1) Lus10005327 [exp] 620 / 0 AT3G63470 449 / 1e-154 serine carboxypeptidase-like 40 (.1) Lus10039582 [exp] 550 / 0 AT3G52020 372 / 1e-121 serine carboxypeptidase-like 39 (.1) Lus10019954 [exp] 380 / 2e-127 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015489 [exp] 379 / 8e-127 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10008793 [exp] 375 / 2e-126 AT3G63470 176 / 7e-50 serine carboxypeptidase-like 40 (.1) Lus10015382 [exp] 372 / 6e-124 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G055900 [exp] 535 / 0 AT3G63470 570 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.001G261100 [exp] 517 / 0 AT3G63470 611 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.009G056000 [exp] 508 / 3e-177 AT3G63470 557 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.007G072300 [exp] 389 / 3e-131 AT5G08260 632 / 0.0 serine carboxypeptidase-like 35 (.1) Potri.006G183200 [exp] 383 / 4e-129 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G120100 [exp] 377 / 2e-126 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.017G094100 [exp] 367 / 2e-122 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.018G105700 [exp] 363 / 2e-121 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.010G220100 [exp] 363 / 2e-121 AT3G07990 735 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.008G041800 [exp] 362 / 1e-120 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10016377 pacid=23161914 polypeptide=Lus10016377 locus=Lus10016377.g ID=Lus10016377.BGIv1.0 annot-version=v1.0 ATGAAGCCCACGATTGCCATTGCCGTCGTTGCCCTTCTCGTAGTACTGTCTTCATGTTTCCCGGCGCCGGCTCATTGCCGGGTCGACCAGCTGAAAGACT TGTTGAAAGTGAAGTTCAATAACCGGTTCGAAACTAGCTCACCATTTGAGCCGGTTCGGTATGAGGAAATTGCTTCTAGACTACATGATGAGGCTGAGCT CCAACAAGCTGAGGCGCCGTCAAAAGACGGCGACCTGATCGTCCGGTTGCCGGGGCAGCCGTTGGTGTCGTTCAGGCAGTACGGCGGATACGTTAGCGTT GACTCGTTGACCGGTAGGAATATGTATTACTACTTCGCCGAAGCTCAGCATCCGAACAAGGACCAATTGCCTCTCGTTCTCTGGCTCAACGGAGGCCCCG GCTGCTCGTCTTTGGGGTACGGAGCAATGACAGAGCAAGGGACATTTAGAGTGGCTAGTGATGGAAAAACTCTATACAGAAACAAATACTCTTGGAATCG AGTTGTGAATCTTCTCTTCGTTGAGTCGCCGGCCGGAGTTGGATTCTCCTACTCGAATAACGCGTCGGATTATACAACTGGAGACATCAAAACAGCTCAA GATAACTTTGTCTTTCTGTATAACTGGCTCCAGAGATTCCCAGAATACAAAGGTCGGGATTTCTACATTGCCGGAGAAAGCTATGCCGGCCATTATGTTC CTCAACTTGCTCAAAACATCATCCTCAATAGGCTAAAAACTCAAGACAACTACATCAACCTCAAGGGGATCATGATAGGAAATGCTGTGATTAATCAAGA AACGGACGGCCTGGGAATGTACGACTTCTTTGGTAACCACGGCCTGGCTTCACCGGAAGCAGTCTCGGCCGTTCGCAGACACTGCAACTTCTCACCGGAG TTCACCGGAAATCAAACTGATGAATGTCATGCTGCCGCTGATGAAGTCGATGCCTCGACAGAAGACATCTACATTTACAATATATACGTCGAAGAGTGCA AGTCCTACACCGGCCCCACCAAGACTCCCCTCCCTTTCTCCATAACAGAGTTCGACGAGTGCAGTGAATATTATGTAATAAACTATCTAAATCGAGAGGA TGTCCAGGAGGCAATGCACGCAAACACAACCAAGATTCCTTATCGTTGGTCTCCTTGTGCCGGAGATCGTATCGACTATAACCAGTTCTCACACTCAACC CTCCATGAAATTCAAAACATGTTGGATAACAACGTCGCCGTCATGATTTATAGCGGTGACATCGATGGAAGGGTGCCGTTTACATCGTCGCAATACTCGA TTAAGGCTATGAACCTCACTGTCGATACCAAGTTCCATCCTTGGTACATTGCTGGACAGGTTGGAGGGTACACGGAGACGTACAAGGAAGGGTTGACATT TGCGACAGTGAGGGGAGCGGGGCATTTAGTTCCGAGCTATCAAGGATTGCGGGGGCTTGCACTCTTCGCGCATTTCATCGATGGCACTGCTCTGCCCAAC AGCAAAAGACACTGA
AA sequence Show only first row Show all	>Lus10016377 pacid=23161914 polypeptide=Lus10016377 locus=Lus10016377.g ID=Lus10016377.BGIv1.0 annot-version=v1.0 MKPTIAIAVVALLVVLSSCFPAPAHCRVDQLKDLLKVKFNNRFETSSPFEPVRYEEIASRLHDEAELQQAEAPSKDGDLIVRLPGQPLVSFRQYGGYVSV DSLTGRNMYYYFAEAQHPNKDQLPLVLWLNGGPGCSSLGYGAMTEQGTFRVASDGKTLYRNKYSWNRVVNLLFVESPAGVGFSYSNNASDYTTGDIKTAQ DNFVFLYNWLQRFPEYKGRDFYIAGESYAGHYVPQLAQNIILNRLKTQDNYINLKGIMIGNAVINQETDGLGMYDFFGNHGLASPEAVSAVRRHCNFSPE FTGNQTDECHAAADEVDASTEDIYIYNIYVEECKSYTGPTKTPLPFSITEFDECSEYYVINYLNREDVQEAMHANTTKIPYRWSPCAGDRIDYNQFSHST LHEIQNMLDNNVAVMIYSGDIDGRVPFTSSQYSIKAMNLTVDTKFHPWYIAGQVGGYTETYKEGLTFATVRGAGHLVPSYQGLRGLALFAHFIDGTALPN SKRH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10016377 [exp]	0	1
AT2G15220			Plant basic secretory protein ...		Lus10026576 [exp]	1.0	0.9598
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10010243 [exp]	1.4	0.8757
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10021849 [exp]	4.2	0.7165
AT2G28830		AtPUB12	PLANT U-BOX 12 (.1)		Lus10023667 [exp]	4.6	0.7609
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10033364 [exp]	18.1	0.7490
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Lus10040501 [exp]	21.0	0.7386
					Lus10025477 [exp]	24.1	0.7326
AT4G08630			unknown protein		Lus10004138 [exp]	24.5	0.7292
					Lus10039965 [exp]	27.0	0.7171
AT4G35220			Cyclase family protein (.1)		Lus10027872 [exp]	33.5	0.6902

Compare expression of checked genes

Lus10016377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.