Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13780 290 / 3e-101 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT1G03150 100 / 6e-27 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT1G03650 40 / 0.0003 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019745 [exp] 119 / 3e-35 AT5G13780 112 / 6e-33 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10042595 [exp] 97 / 3e-25 AT1G03150 348 / 6e-125 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10022048 [exp] 89 / 2e-22 AT1G03150 333 / 6e-119 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10016904 [exp] 41 / 0.0003 AT4G37580 181 / 3e-53 UNUSUAL SUGAR RESPONSE 2, HOOKLESS 1, CONSTITUTIVE PHOTOMORPHOGENIC 3, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G056600 [exp] 312 / 1e-109 AT5G13780 307 / 5e-108 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.001G261800 [exp] 308 / 3e-108 AT5G13780 301 / 8e-106 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.005G210400 [exp] 99 / 4e-26 AT1G03150 350 / 2e-125 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.002G052000 [exp] 86 / 3e-21 AT1G03150 287 / 4e-101 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.013G134102 [exp] 39 / 0.0005 AT1G03650 242 / 2e-83 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.013G134000 [exp] 39 / 0.0005 AT1G03650 240 / 2e-82 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10016378 pacid=23161856 polypeptide=Lus10016378 locus=Lus10016378.g ID=Lus10016378.BGIv1.0 annot-version=v1.0 ATGGACGACCTGCTGGCGATGCAGGCTTGCAACTTGCTATGCCTGCCTGAGAACTACCAGATGAAATATTACTTCTACCACATCCTCTCCTGGCCGCAGC TCCTCTACGTCGCCGAGGACTACAATGGCCGGATCGTCGGGTACGTGCTGGCGAAGATGGAAGAGGAGTCGAACGAGTGCCACGGTCACATCACTTCTCT CGCCGTTCTCCGCACTCATCGCAAGTTGGGACTCGCCACTAAGCTCATGACCGCAGCCCAGAGCGCCATGGAACAGGTATTTGGGGCAGAGTATGTGTCT CTGCACGTGAGGAAGAGTAACCGGGCGGCATTTCACCTCTACACCGAGACCTTGGGATACAGTATTCAAGATGTGGAAGCGAAATATTACGCCGATGGAG AGGACGCATATGATATGAGGAAGCAGCTCAAGGGGAAACAAATTCACCAGCAGCACCACCACCACCATCACCATCATCACGGCGGTGGTTGTTGTGCGCC TCAGCCCAAACCAATTGAAGCAAAACCCGAACCGAAAACTGAGGGAAACCCCGTTGCAAAAGCTGAAGCAAAAGCAGCATGA
AA sequence Show only first row Show all	>Lus10016378 pacid=23161856 polypeptide=Lus10016378 locus=Lus10016378.g ID=Lus10016378.BGIv1.0 annot-version=v1.0 MDDLLAMQACNLLCLPENYQMKYYFYHILSWPQLLYVAEDYNGRIVGYVLAKMEEESNECHGHITSLAVLRTHRKLGLATKLMTAAQSAMEQVFGAEYVS LHVRKSNRAAFHLYTETLGYSIQDVEAKYYADGEDAYDMRKQLKGKQIHQQHHHHHHHHHGGGCCAPQPKPIEAKPEPKTEGNPVAKAEAKAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13780			Acyl-CoA N-acyltransferases (N...		Lus10016378 [exp]	0	1
AT4G26670			Mitochondrial import inner mem...		Lus10043170 [exp]	2.4	0.9504
AT4G39880			Ribosomal protein L23/L15e fam...		Lus10041700 [exp]	2.8	0.9641
AT5G64670			Ribosomal protein L18e/L15 sup...		Lus10023078 [exp]	3.5	0.9533
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10023565 [exp]	3.7	0.9603
AT4G02730		AtWDR5b	human WDR5 \(WD40 repeat\) hom...		Lus10006916 [exp]	4.9	0.9342
AT1G76820			eukaryotic translation initiat...		Lus10012856 [exp]	6.3	0.9489
AT5G20600			unknown protein		Lus10027609 [exp]	7.1	0.9504
AT5G35530			Ribosomal protein S3 family pr...		Lus10030502 [exp]	7.5	0.9550
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030620 [exp]	7.9	0.9502
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10032624 [exp]	10.1	0.9391

Compare expression of checked genes

Lus10016378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.