Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13720 314 / 1e-107 Uncharacterised protein family (UPF0114) (.1) AT4G19390 181 / 3e-55 Uncharacterised protein family (UPF0114) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019743 [exp] 436 / 3e-155 AT5G13720 340 / 6e-119 Uncharacterised protein family (UPF0114) (.1) Lus10029480 [exp] 399 / 3e-140 AT5G13720 328 / 2e-113 Uncharacterised protein family (UPF0114) (.1) Lus10037258 [exp] 176 / 3e-53 AT4G19390 245 / 3e-81 Uncharacterised protein family (UPF0114) (.1) Lus10035674 [exp] 172 / 9e-48 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10032866 [exp] 140 / 4e-39 AT4G19390 166 / 6e-50 Uncharacterised protein family (UPF0114) (.1) Lus10018793 [exp] 135 / 1e-37 AT4G19390 169 / 1e-51 Uncharacterised protein family (UPF0114) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G057300 [exp] 348 / 1e-120 AT5G13720 308 / 8e-106 Uncharacterised protein family (UPF0114) (.1) Potri.004G234600 [exp] 182 / 6e-56 AT4G19390 246 / 1e-81 Uncharacterised protein family (UPF0114) (.1) Potri.014G039000 [exp] 147 / 6e-42 AT4G19390 163 / 1e-48 Uncharacterised protein family (UPF0114) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03350 [flax] [poplar] UPF0114 Uncharacterized protein family, UPF0114
Representative CDS sequence Show only first row Show all	>Lus10016380 pacid=23161852 polypeptide=Lus10016380 locus=Lus10016380.g ID=Lus10016380.BGIv1.0 annot-version=v1.0 ATGGCTCTCTATGCATTATTCTGCGCTTGTCCTGCTCCAATTTCCACCTCAGCTAGCCGGAACTTCATCTCTACTAACCGGAGGACGAGATTCACTGCAG GAACTTCAGCTGCTTTAAATTCATCGCTGCCACCTTCGTCCTCTTCCTCCCCTGAATCTTCGACGTCCAAGAAGAACCCATCAAACCCATTTGTTGAATC CGACTTCAACTACGCACTCGCCAATCCAAATGGCAACCCAGTTGTCCAGTTCGTTAGATCCACCGAGTCCAACATCGAGAGGATTATGAGATGCAGAATT CCTGGACTGTTTTCAGATGCATGGTGGACTGTAGACTGTTTTAATTCTGTGGATACAGAGAACGAGGTTTCTGATTTGACACACTTTCATGATTCTGCTG ATGATGATCCAATTCTTTGTGATGATTTTAATGAGCAGGCAATCTTTGACTTCCGCTTCTTGGCGCTCTTTGCTGTTGTGGGATCCTTGGCTGGCTCACT CCTCTGCTTTCTCAATGGTTGCACTTACATCGTTGATGCCTACAGAGTTTATTGGACAAGTTGTGTAAAAGGAGTCCATTCAGGAAAGATGGTTCTGCGC CTAGTTGAGGCCATCGACGTGTATCTTGCCGGGACAGTGATGCTGATCTTCGGCATGGGACTGTACGGGTTGTTCATCAGCAATGCATCCACCGATGCCG ACCCGAGTGACGACCGTGCCCTGAAAGGATCTTCCTTCTTTGGGATGTTTGCACTGAAGGAAAGGCCCAAGTGGATGAAGATCAGCTCGCTGGACGAGCT GAAGACGAAAGTGGGGCATGTGATTGTGATGATTCTTCTGGTGAAGATGTTTGAGAGGAGCAAGATGGTGACCATAGCGACGGGGTTGGACCTTTTGAGC TACTCCGTCTGCATCTTCTTGTCCTCTGCTTCCTTGTACATCCTCCACAATCTGCACAAGCAAGATTGA
AA sequence Show only first row Show all	>Lus10016380 pacid=23161852 polypeptide=Lus10016380 locus=Lus10016380.g ID=Lus10016380.BGIv1.0 annot-version=v1.0 MALYALFCACPAPISTSASRNFISTNRRTRFTAGTSAALNSSLPPSSSSSPESSTSKKNPSNPFVESDFNYALANPNGNPVVQFVRSTESNIERIMRCRI PGLFSDAWWTVDCFNSVDTENEVSDLTHFHDSADDDPILCDDFNEQAIFDFRFLALFAVVGSLAGSLLCFLNGCTYIVDAYRVYWTSCVKGVHSGKMVLR LVEAIDVYLAGTVMLIFGMGLYGLFISNASTDADPSDDRALKGSSFFGMFALKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGLDLLS YSVCIFLSSASLYILHNLHKQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13720			Uncharacterised protein family...		Lus10016380 [exp]	0	1
					Lus10005720 [exp]	2.6	0.9489
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10017574 [exp]	5.8	0.9342
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Lus10003337 [exp]	6.5	0.9299
AT1G32540		LOL1	lsd one like 1 (.1.2.3)		Lus10030969 [exp]	8.9	0.9173
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016499 [exp]	9.5	0.8687
AT4G31530			NAD(P)-binding Rossmann-fold s...		Lus10009715 [exp]	10.2	0.9209
AT1G76450			Photosystem II reaction center...		Lus10030719 [exp]	10.8	0.9284
AT5G21430		NdhU, CRRL	NADH dehydrogenase-like comple...		Lus10027616 [exp]	11.5	0.9274
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Lus10040228 [exp]	14.1	0.9279
AT5G40500			unknown protein		Lus10022273 [exp]	16.8	0.8514

Compare expression of checked genes

Lus10016380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.