Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019742 [exp] 205 / 3e-70 ND 35 / 0.004 Lus10027634 [exp] 40 / 0.0001 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1) Lus10011934 [exp] 39 / 0.0002 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1) Lus10002040 [exp] 37 / 0.0007 AT1G75690 203 / 5e-68 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G137900 [exp] 166 / 5e-55 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016381 pacid=23161798 polypeptide=Lus10016381 locus=Lus10016381.g ID=Lus10016381.BGIv1.0 annot-version=v1.0 ATGATTCCGAAGCCAATTCCGATGGTAAAGACCGCCGCTTTAATCGTCGGCGGCTTGGTTGCTATCAATGTCACTTCTACCCTCGCCGTCAGCGCCCTCC GCCACACCACTGATCTCAAACGGAGAAAAGTTGCATTGCCATGTGGGGTTTGCCGCGGGAAAGGGTTCTACATATGCAAGCTCTGCAAAGGAAACGCCAC CATAGAAGAATGGTCTCCTCTGTACGACCCTGTCGCCATGAACCCTTGCCTCTGCCCCACTTGTGATGGAAATAGAGTCCAGCGATGTTTGAACTGTCTT GGCAAGGGCTACAGTTGA
AA sequence Show only first row Show all	>Lus10016381 pacid=23161798 polypeptide=Lus10016381 locus=Lus10016381.g ID=Lus10016381.BGIv1.0 annot-version=v1.0 MIPKPIPMVKTAALIVGGLVAINVTSTLAVSALRHTTDLKRRKVALPCGVCRGKGFYICKLCKGNATIEEWSPLYDPVAMNPCLCPTCDGNRVQRCLNCL GKGYS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10016381 [exp]	0	1
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10040240 [exp]	2.4	0.7237
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Lus10021303 [exp]	15.9	0.7326
AT3G61360			Tetratricopeptide repeat (TPR)...		Lus10001784 [exp]	51.9	0.6870
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10013562 [exp]	55.7	0.6832
AT5G66560			Phototropic-responsive NPH3 fa...		Lus10041276 [exp]	112.9	0.6260
AT4G35890			winged-helix DNA-binding trans...		Lus10014255 [exp]	127.9	0.6424
AT3G55140			Pectin lyase-like superfamily ...		Lus10003307 [exp]	152.7	0.6309
AT3G06740	GATA	GATA15	GATA transcription factor 15 (...		Lus10037721 [exp]	161.2	0.6184
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10016629 [exp]	195.0	0.6058

Compare expression of checked genes

Lus10016381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.