Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33260 277 / 3e-91 Protein kinase superfamily protein (.1.2) AT4G10390 272 / 2e-89 Protein kinase superfamily protein (.1) AT3G19300 173 / 1e-48 Protein kinase superfamily protein (.1) AT3G02810 172 / 1e-48 Protein kinase superfamily protein (.1) AT3G58690 169 / 1e-48 Protein kinase superfamily protein (.1) AT2G29000 174 / 5e-48 Leucine-rich repeat protein kinase family protein (.1) AT5G54590 165 / 6e-47 CRLK1 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) AT2G28960 169 / 2e-46 Leucine-rich repeat protein kinase family protein (.1) AT2G04300 167 / 1e-45 Leucine-rich repeat protein kinase family protein (.1) AT1G51880 166 / 3e-45 RHS6 root hair specific 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019741 [exp] 664 / 0 AT1G33260 274 / 6e-90 Protein kinase superfamily protein (.1.2) Lus10013656 [exp] 357 / 2e-122 AT4G10390 282 / 2e-93 Protein kinase superfamily protein (.1) Lus10043083 [exp] 170 / 8e-49 AT5G54590 652 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10032672 [exp] 168 / 4e-48 AT5G54590 650 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10041426 [exp] 157 / 3e-44 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036499 [exp] 156 / 8e-44 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019897 [exp] 154 / 2e-43 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10013014 [exp] 155 / 3e-43 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10014019 [exp] 155 / 6e-43 AT5G02800 532 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G147100 [exp] 335 / 8e-114 AT4G10390 325 / 5e-110 Protein kinase superfamily protein (.1) Potri.001G454800 [exp] 326 / 5e-109 AT1G33260 323 / 5e-108 Protein kinase superfamily protein (.1.2) Potri.001G415300 [exp] 168 / 3e-48 AT5G54590 633 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.006G242800 [exp] 166 / 8e-46 AT3G24550 449 / 6e-149 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.004G140301 [exp] 166 / 1e-45 AT1G49730 744 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.009G100400 [exp] 166 / 1e-45 AT3G19300 773 / 0.0 Protein kinase superfamily protein (.1) Potri.011G131200 [exp] 161 / 1e-45 AT5G54590 631 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.004G235700 [exp] 158 / 6e-45 AT5G54590 161 / 2e-45 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.010G200600 [exp] 164 / 7e-45 AT3G55550 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.013G025700 [exp] 159 / 9e-45 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10016382 pacid=23161869 polypeptide=Lus10016382 locus=Lus10016382.g ID=Lus10016382.BGIv1.0 annot-version=v1.0 ATGGCGTTTGGCGACGGCTGCTGCGTACCATTCCCAAGTTTCCTGACTTGCAGGCGCCGCCGTCGGAAACCCACGGGGGACCAGGTGGTGGCTGTTTGCG ATGACGACGATTTTGTGGCTGTTTACACCTGGCCAGAGATTGAGAGGCTTACCCTTGATTTCAATTGCTTGATTGGATCTGGTGGGTTTAGTAATGTGTA TTTGGCGACGCATCCCACCAGCGGCGGCTACGCCGCAGTGAAGGTCTGCTGCGCCGGCGGGGACTATCTAAGCCCTCTTTTCAATCAGGAGCTCGACATC CTTCTCCGTCTCCGCCACCCGAATGTCGTCAGACTTTTAGGGTACTCCTCCGATCAAGGAGGTGCACTGATGATGGAGTATGCAGCCAACGGAACCTTGC AAGAGAGGCTACACGGCAGCAAGTCGATTTCTTTCAACACCGGAAACCCTCCTCCGTTATCTTGGACGAGAAGAATGGCAATCGCTTACCAGCTCGCGCA AGCAATCGAGTACCTCCACGACAAATGCGACTCCCAACTCCCGATCGTCCACGGAGACATCAAAGCCACCAACGTCTTGCTCGACTCCCAGCTTAACTGC AAGCTCTGCGATTTCGGTTCAGCCAAGATAGGGTTCTCTTCCTCCGTGGCTGCAACGCGGCCGCGGAGAAAGCTCGTGGGTTCCTTAGGGTACACGGATC CACACTACATAAGGACCGGCCTCCCGTCAAAGAAGAACGACATCTACAGCTACGGAGTTGTGGTGCTGGAGCTCGTTACTGGTCGTGTGGCCTTCTCGGA GGAGAAGAGTCAGCTGCTCGCATCGGTGATCGGGCCGATGATTATTCAACAAGAAGAAGGTGGTGTGGGAGTAATTGATGCGGCGGGAATGGTGGATCCG AGATTGGGTGGGGAGTTTGACGTTGAGGAAGCCGAGGCCATGTTGAGGATTGCAGGGAAGTGTATTGGTGAGGCGCCAACTGTGAGGCCTACTGCTACGG AGATAGTGGAGGCCATGATTGTGAATGTGCCGTCTGCTTTTTCTTCTTCCATGTGCTCTGATGCTGCTGTGAAAGAATTAGGGAACAATTAA
AA sequence Show only first row Show all	>Lus10016382 pacid=23161869 polypeptide=Lus10016382 locus=Lus10016382.g ID=Lus10016382.BGIv1.0 annot-version=v1.0 MAFGDGCCVPFPSFLTCRRRRRKPTGDQVVAVCDDDDFVAVYTWPEIERLTLDFNCLIGSGGFSNVYLATHPTSGGYAAVKVCCAGGDYLSPLFNQELDI LLRLRHPNVVRLLGYSSDQGGALMMEYAANGTLQERLHGSKSISFNTGNPPPLSWTRRMAIAYQLAQAIEYLHDKCDSQLPIVHGDIKATNVLLDSQLNC KLCDFGSAKIGFSSSVAATRPRRKLVGSLGYTDPHYIRTGLPSKKNDIYSYGVVVLELVTGRVAFSEEKSQLLASVIGPMIIQQEEGGVGVIDAAGMVDP RLGGEFDVEEAEAMLRIAGKCIGEAPTVRPTATEIVEAMIVNVPSAFSSSMCSDAAVKELGNN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33260			Protein kinase superfamily pro...		Lus10016382 [exp]	0	1
AT4G12690			Plant protein of unknown funct...		Lus10036872 [exp]	5.6	0.9251
AT4G31470			CAP (Cysteine-rich secretory p...		Lus10005557 [exp]	8.9	0.9105
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10032394 [exp]	12.8	0.8505
AT4G12690			Plant protein of unknown funct...		Lus10006223 [exp]	16.9	0.9243
AT3G12610		DRT100	DNA-DAMAGE REPAIR/TOLERATION 1...		Lus10015700 [exp]	17.0	0.8765
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10039222 [exp]	17.3	0.9031
AT4G28720		YUC8	YUCCA 8, Flavin-binding monoox...		Lus10022851 [exp]	17.3	0.8987
AT1G05560		UGT75B1, UGT1	UDP-GLUCOSE TRANSFERASE 1, UDP...		Lus10040590 [exp]	19.4	0.9052
AT5G53880			unknown protein		Lus10000796 [exp]	22.8	0.8711
AT3G12610		DRT100	DNA-DAMAGE REPAIR/TOLERATION 1...		Lus10037705 [exp]	23.2	0.8685

Compare expression of checked genes

Lus10016382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.