Plant FIBer expression Database

Lus10016383 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G26750 145 / 2e-44 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019740
[exp]
291 / 5e-102 AT1G26750 168 / 2e-53 unknown protein
Lus10031376
[exp]
223 / 4e-75 AT1G26750 145 / 4e-44 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G165500
[exp]
169 / 8e-54 AT1G26750 171 / 2e-54 unknown protein
PFAM info
Representative CDS sequence
>Lus10016383 pacid=23161845 polypeptide=Lus10016383 locus=Lus10016383.g ID=Lus10016383.BGIv1.0 annot-version=v1.0
ATGTCGTTTATGAAGGGGGATTTGCTGTCAAGAACCAGGAGGCTTGTCAAGGGCATGGCTAAAGCCGAGCCTGTTTGGCTCAAGGCCATGGAGCAGGCAC
CTCCTGCAACATTTCCTCTTACTAATGGGAAGATCCAGAAAATCATCCTCCCTGAAGATCCTTACATAAAGAAGTTCTTCGAGAAGCACCCACTTTTACA
ACCCGAAGATCCCGTCAGGATGTCTAGCATCAATCCACCTCCAGCACGAGTGTTTGCCTCGCGGGTGCTCGAGTTAAAGAAACAGGGAGTCTGCGAGGAA
GAAGCCATCAATAGGGAGTATCGAACGGAGAGAAAAACGAGAAAGGAGGCTTATACTCGACTGAAAGAAATAGCCAATGTTCTGGGTAAGAACCCTCCTC
CAAGGCCATATCCGAAGAACAAGAAAGAGACGCGGGAAGAAGAGAGGTGGCAGGCTCGTAAGCCTAGGATCTTCGAGATTGTACGGAGGCTCAAGGATGA
AATGACGGCTGACACCACGCGTGAAAGATCCCGACGCAACTGA
AA sequence
>Lus10016383 pacid=23161845 polypeptide=Lus10016383 locus=Lus10016383.g ID=Lus10016383.BGIv1.0 annot-version=v1.0
MSFMKGDLLSRTRRLVKGMAKAEPVWLKAMEQAPPATFPLTNGKIQKIILPEDPYIKKFFEKHPLLQPEDPVRMSSINPPPARVFASRVLELKKQGVCEE
EAINREYRTERKTRKEAYTRLKEIANVLGKNPPPRPYPKNKKETREEERWQARKPRIFEIVRRLKDEMTADTTRERSRRN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G26750 unknown protein Lus10016383
[exp]
0 1
AT5G04000 unknown protein Lus10042034
[exp]
3.5 0.8411
AT4G04614 unknown protein Lus10014685
[exp]
4.6 0.8232
AT2G29540 ATRPAC14, ATRPC... RNApolymerase 14 kDa subunit (... Lus10040717
[exp]
5.5 0.8439
AT1G64750 DSS1(I), ATDSS1... deletion of SUV3 suppressor 1(... Lus10030906
[exp]
6.2 0.8498
AT2G43780 unknown protein Lus10035718
[exp]
6.3 0.8206
AT5G46160 Ribosomal protein L14p/L23e fa... Lus10023296
[exp]
6.3 0.8174
AT3G62810 complex 1 family protein / LVR... Lus10021599
[exp]
6.9 0.8000
AT1G66240 ATX1, ATATX1 homolog of anti-oxidant 1 (.1.... Lus10028859
[exp]
8.2 0.8452
AT2G38280 ATAMPD, FAC1 EMBRYONIC FACTOR1, ADENOSINE 5... Lus10005043
[exp]
10.2 0.7946
AT3G16640 TCTP translationally controlled tum... Lus10033959
[exp]
10.4 0.8191

Lus10016383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.