Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 367 / 2e-111 disease resistance family protein / LRR family protein (.1) AT2G32680 257 / 7e-72 AtRLP23 receptor like protein 23 (.1) AT3G11080 248 / 1e-68 AtRLP35 receptor like protein 35 (.1) AT4G04220 245 / 4e-68 AtRLP46 receptor like protein 46 (.1) AT2G15080 246 / 2e-67 AtRLP19 receptor like protein 19 (.1.2) AT4G13920 243 / 4e-67 AtRLP50 receptor like protein 50 (.1) AT3G11010 242 / 7e-67 AtRLP34 receptor like protein 34 (.1) AT3G25020 242 / 1e-66 AtRLP42 receptor like protein 42 (.1) AT1G71400 240 / 3e-66 AtRLP12 receptor like protein 12 (.1) AT5G25910 239 / 3e-66 AtRLP52 receptor like protein 52 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029483 [exp] 1154 / 0 AT2G34930 484 / 1e-155 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 468 / 2e-148 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 468 / 3e-148 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 465 / 3e-147 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 464 / 2e-146 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 456 / 2e-143 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10002743 [exp] 444 / 2e-139 AT2G34930 476 / 6e-153 disease resistance family protein / LRR family protein (.1) Lus10016326 [exp] 439 / 4e-137 AT2G34930 456 / 2e-145 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 432 / 1e-134 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262800 [exp] 791 / 0 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 479 / 2e-152 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 476 / 3e-151 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 404 / 4e-124 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 402 / 8e-124 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 400 / 2e-123 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 403 / 6e-123 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 398 / 2e-122 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 397 / 5e-122 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 394 / 2e-119 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10016384 pacid=23161876 polypeptide=Lus10016384 locus=Lus10016384.g ID=Lus10016384.BGIv1.0 annot-version=v1.0 ATGGAAGGCTTTCTTGTGCTACTGCCAGCTTTATCATCTGCCATTTTTCTGATGCTACTGACAGGTCCATTGCTAATTCAAATTGGGAGGGCTGAAGTAA AATGCCTGGAATCTGATAGAGATGCACTCCTGGATTTCAAGAATGGATTGATGGATCCATCCAATAGGCTCACCTCATGGACAAGATTCAGCAACTGCTG CCAATGGAGTGGCATCTCTTGTGATAACATAACTGGAGCTGTCGTGTCTTTGGATCTCCATAGCCAAGATGCAACAAACTTATTCACACCCGGGTCTGAC GGTCTGTCAGGTGACATCAGCCCTTCCTTGGCAAAACTCAAGTCATTGAAACACTTAGACTTGAGTTCCAATGCATTTGATGGAGTCAAGATTCCTGAAT TCTTGCATTCTTTCAAGGAGTTAGAGTATCTGAACTTGGCCAATGCTGGGTTCTATGACAAAATTCCACCAAGCTTTGGCAACATATCCACATTGAAGTA CCTTAATCTTTCTTCATACAGTTCATATTTATCAGTAAGCAATCTTGAATGGTTGAGCAGCCTCGTCTCTCTCAGGTACCTGGTTTTGAATGGTGTTGAT CTTTCTAATTCGACTTTGGATTGGATTAAGGCAGTGGACATGATCCCGAATATAACTGATATTCATCTATCATCTTGTAAGCTGAACAGCTCCATTTCTG ATCAGAGCTTTCAGAATCTTACCTCCCTTTTTGTTCTGGATCTCAGCCTCAATCTCTTCAATTCAGAGTTTCTTCACTGGGTATCTAACATCAGTAGCCT GGTTTCAGTTGATCTCCATGAAAGCAGGGTCCGGGGCAGTTTCGTGGTTGATTTTGGTGGGATGCCAAATCTGGAATTCTTGTATCTTTCTGGGAATGCG CTTGGTGCTGATGTGGCTGATATATTCAGCAGGGGTTGGAGTAGGTTACAGGTTATTGACTTGGCTTTGACTCATCTATATGGTGAGATTCCGAAGCAAA TTGGGAATATGACATCTCTAACTCACCTTGATCTGAGAAGCAACAACATCAGTGGCAGGATTCCACACTCCATATCCTCACTACATGGACTAACCCATCT TGATTTGTCAAATAATCGTCTGTCAGGAAGTCTGCAGATCCTAGAACAAGGAACATCAGAGAATTGTTGCGATTCTTCCGAATGCCCTTTTCCAATCTTG GAGAGACTGTTCCTGAGCAACAACACACTTGAAGGTGTATTGCCTTGTTGGTTAGGGAAGCTACCAGATATTGTAGAACTATTCCTGGATTCCAACTCTT TTGAAGGCCCACTCCTTCCTTCGTTAGGAAAATTGAGCCGTTTGAAGGAACTCAGACTTGGTGGCAATTGGCTAAATGGTACGCTTCCAGAGAGTTTCGG ACAGCTTCTTGATTTGGAAGTCCTGGATGTGTCTTTCAACCGTCTACATGGTGTTGTTTCTGAAGCTCATTTCGTCAAGACAAATAGGCTGACGTTTTTG AAGTTATCTTCCAACTCGTTTGTTCTGAATGTCAGTTCCGATTGGGATCTTCCAGGGAACCTCGTGACGCTTGGAATGGGTTCTTGTACAATTGGCCCTC CGTTCCCTCCTTGGCTTAGACCTCTTCAACAACTAGCATTCCTAGATCTTTCAAATGCTAGTATCTCTGGCGAAATCCCTTCCTGGTTCTGGAACTTGAC CGGTGGTCTCAAGTTGCTGAACTTTTCAATGAATCAGTTCCAGGGTAGACTCCCGAGTCAACTGAACTTTACTTCTTTTGGAGAGGTCGATTTAAGTTTC AACCAGTTTGAAGGACCCATTCCAAAGGATTTTGTTAATGAAATTTTCCTGCTCAGTCTTTCAAACAACAGATTGTCGGGAACTATACCGGGTAATATCG GAGATGTTTTGGTGGGAGGTAAATTCCTCTCTCTGTCTGATAACCAACTCACTGGTCACATCCCAGATTCTGTAGGGAACTTAAATTATGCGATAGGAAT CGATCTGTCTTACAACAATTTAACAGGAAGCATCCCAGCAAGCTTGGGGAACTGTTTGTTTCTAGAGGTTTTGGATCTAAAGAACAACAATTTATCAGGT GTTATTCCTGATTCTCTAGGTCAGTTAAGTTCTCTATTTTCACTTCATCTCAGGGATAACATGCTCACAGGAAGGATTCCCAGGTCGTTTCGGAACCTAA CGAGTCTTCAGACATTGGACCTTGGGCATAACAGACTAACTGGTGAACTCCCAATGTGGATGGGATACTTATTGACAAGTCTCAGTATTCTTTCCCTGGG ATCAAATGCATTTTCTGGACAGATTCCTTCTACACTGGCAAGGCTGGAATCCTTGTTAGTCCTCGATCTTGCAGGGAATCAGTTCAATGGAACAATTCCT GCAAGCTTCGGGGATTTCAAAGCGATGTCGCAGAAACAAAGCACATTTCGCAACTGGAGGTACATGGTGGGCAATGCCAACTACTACAAAGAAAACATCG TTGTGACTGTAAAGGGCGTGTCCTGGCAGTTCACCAGGACTCTATCTGTCCTGACCTGTATCGACCTTTCAGGCAACAATCTCCACGGAGATTTCCCAAC CCAACTGACGAATTTAGCCGGGTTGGTTGTACTGAGCTTGCCAGGAAATCAATTCAAAGGCCAATTACCTTCCAACCTATCAGAGTTAACTCAGCTATCA TCCCTGGATCTGTCGAACAACAGACTTTCTGGACAGATTCCTCCAAGCCTGGCCGGGTTATCTTTTATGGGATACCTAAACCTGTCAAACAACAACCTTT CAGGAAGAATCCCTTTCAAGGGCCAGCTAGCAACGTTTGATTCTTCGTCTTTCAATGGTAATCCCGGTCTCTGCGGGCCTCCTCTTGTAACTAGTTGTTC TGATGATGGTTCAGGTGATTGGGGAGCAACTCGACAGAATTTTGGCAATCGTGGACGTGCGGATAGGATTTTGTACTTCAGCATTGCATTTGGGTTTGCA GCTGGAATATCGGTCCCCTTTTACGTGTATGCGATTAGGAAATCGTGGAGTGATGCTTACTTTCGACTTGTCGATGCTATGGTTGACAGATTGTATTCGG TTGGAGGCAAAATCATGAGAAATCTCAGAAGCTACTACCTCTGA
AA sequence Show only first row Show all	>Lus10016384 pacid=23161876 polypeptide=Lus10016384 locus=Lus10016384.g ID=Lus10016384.BGIv1.0 annot-version=v1.0 MEGFLVLLPALSSAIFLMLLTGPLLIQIGRAEVKCLESDRDALLDFKNGLMDPSNRLTSWTRFSNCCQWSGISCDNITGAVVSLDLHSQDATNLFTPGSD GLSGDISPSLAKLKSLKHLDLSSNAFDGVKIPEFLHSFKELEYLNLANAGFYDKIPPSFGNISTLKYLNLSSYSSYLSVSNLEWLSSLVSLRYLVLNGVD LSNSTLDWIKAVDMIPNITDIHLSSCKLNSSISDQSFQNLTSLFVLDLSLNLFNSEFLHWVSNISSLVSVDLHESRVRGSFVVDFGGMPNLEFLYLSGNA LGADVADIFSRGWSRLQVIDLALTHLYGEIPKQIGNMTSLTHLDLRSNNISGRIPHSISSLHGLTHLDLSNNRLSGSLQILEQGTSENCCDSSECPFPIL ERLFLSNNTLEGVLPCWLGKLPDIVELFLDSNSFEGPLLPSLGKLSRLKELRLGGNWLNGTLPESFGQLLDLEVLDVSFNRLHGVVSEAHFVKTNRLTFL KLSSNSFVLNVSSDWDLPGNLVTLGMGSCTIGPPFPPWLRPLQQLAFLDLSNASISGEIPSWFWNLTGGLKLLNFSMNQFQGRLPSQLNFTSFGEVDLSF NQFEGPIPKDFVNEIFLLSLSNNRLSGTIPGNIGDVLVGGKFLSLSDNQLTGHIPDSVGNLNYAIGIDLSYNNLTGSIPASLGNCLFLEVLDLKNNNLSG VIPDSLGQLSSLFSLHLRDNMLTGRIPRSFRNLTSLQTLDLGHNRLTGELPMWMGYLLTSLSILSLGSNAFSGQIPSTLARLESLLVLDLAGNQFNGTIP ASFGDFKAMSQKQSTFRNWRYMVGNANYYKENIVVTVKGVSWQFTRTLSVLTCIDLSGNNLHGDFPTQLTNLAGLVVLSLPGNQFKGQLPSNLSELTQLS SLDLSNNRLSGQIPPSLAGLSFMGYLNLSNNNLSGRIPFKGQLATFDSSSFNGNPGLCGPPLVTSCSDDGSGDWGATRQNFGNRGRADRILYFSIAFGFA AGISVPFYVYAIRKSWSDAYFRLVDAMVDRLYSVGGKIMRNLRSYYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10016384 [exp]	0	1
AT4G14920			Acyl-CoA N-acyltransferase wit...		Lus10006110 [exp]	4.1	0.8893
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Lus10002169 [exp]	10.4	0.8867
AT3G48810			Pentatricopeptide repeat (PPR)...		Lus10009023 [exp]	13.1	0.8199
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10000262 [exp]	16.1	0.8350
AT3G26010			Galactose oxidase/kelch repeat...		Lus10037467 [exp]	16.1	0.8228
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Lus10029695 [exp]	19.2	0.8720
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Lus10006586 [exp]	19.8	0.8813
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10009241 [exp]	23.5	0.8547
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10038007 [exp]	24.7	0.8404
AT2G35540			DNAJ heat shock N-terminal dom...		Lus10027316 [exp]	24.8	0.8397

Compare expression of checked genes

Lus10016384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.