Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29850 171 / 1e-55 Eukaryotic protein of unknown function (DUF872) (.1) AT2G19350 163 / 2e-52 Eukaryotic protein of unknown function (DUF872) (.1) AT3G29170 61 / 5e-12 Eukaryotic protein of unknown function (DUF872) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019737 [exp] 209 / 2e-70 AT4G29850 167 / 3e-55 Eukaryotic protein of unknown function (DUF872) (.1) Lus10039596 [exp] 179 / 1e-58 AT4G29850 169 / 3e-56 Eukaryotic protein of unknown function (DUF872) (.1) Lus10007465 [exp] 72 / 2e-16 AT3G29170 125 / 2e-38 Eukaryotic protein of unknown function (DUF872) (.1) Lus10028939 [exp] 47 / 3e-06 AT3G29170 80 / 3e-18 Eukaryotic protein of unknown function (DUF872) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G133500 [exp] 171 / 2e-55 AT4G29850 154 / 3e-50 Eukaryotic protein of unknown function (DUF872) (.1) Potri.006G072000 [exp] 167 / 3e-54 AT4G29850 176 / 6e-59 Eukaryotic protein of unknown function (DUF872) (.1) Potri.006G053300 [exp] 75 / 1e-17 AT3G29170 132 / 3e-41 Eukaryotic protein of unknown function (DUF872) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05915 [flax] [poplar] DUF872 Eukaryotic protein of unknown function (DUF872)
Representative CDS sequence Show only first row Show all	>Lus10016385 pacid=23161811 polypeptide=Lus10016385 locus=Lus10016385.g ID=Lus10016385.BGIv1.0 annot-version=v1.0 ATGGCTCGGCGCCATGGGGTGCCGGCAATGCAGCGGCGGTACGGTGGCGCGGCAGCAATGGTGCAACGGTCTAACGGAGGCATGGCAACCTCGATGCAAC GGCGCAGTGGCAGTGTTGGCGGCGATGATTCAACTGCGGCGGTGGCAATGCGTCACAGTCACAAGCAAGCCAACCGCAGCTTTCATACACCACCCGCCTC CTTCAAAGATCCGTGCTTGAACCAAACACCCACTCAGCTCGAAATGGCGTATGTTGATCACGCTTTTTCAATCACAGACGACGACGATTTGATGTTGGAA GGACCTTACAGCACCAGCAACCGTGCTCCGATCAAGGAGATCGCCCTCGCCGTCTCGCTACTCGTCTTCGGCGTCGTCGGTATCCTAGCCGGCTTTTTCA TGGTCTCCAACAGAGTCGGCGGTGACCGAGCCCACGGGATGTTCTTCGTGATATTGGGGGTGATTCTCTTCATACCGGGGTTCTATTACACCAGGATTGC TTACTACGCTTACAAAGGATACAAAGGCTTCTCCTTTTCCAACATTCCTCCTGTATGA
AA sequence Show only first row Show all	>Lus10016385 pacid=23161811 polypeptide=Lus10016385 locus=Lus10016385.g ID=Lus10016385.BGIv1.0 annot-version=v1.0 MARRHGVPAMQRRYGGAAAMVQRSNGGMATSMQRRSGSVGGDDSTAAVAMRHSHKQANRSFHTPPASFKDPCLNQTPTQLEMAYVDHAFSITDDDDLMLE GPYSTSNRAPIKEIALAVSLLVFGVVGILAGFFMVSNRVGGDRAHGMFFVILGVILFIPGFYYTRIAYYAYKGYKGFSFSNIPPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29850			Eukaryotic protein of unknown ...		Lus10016385 [exp]	0	1
AT4G29850			Eukaryotic protein of unknown ...		Lus10019737 [exp]	2.0	0.8552
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Lus10027027 [exp]	2.2	0.8720
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10042678 [exp]	3.7	0.8425
AT4G25000		AMY1, AMY3, ATA...	alpha-amylase-like (.1)		Lus10042655 [exp]	5.0	0.8180
AT2G01850		ATXTH27, EXGT-A...	XYLOGLUCAN ENDOTRANSGLUCOSYLAS...		Lus10013240 [exp]	5.5	0.8459
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Lus10004403 [exp]	5.7	0.8360
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10012921 [exp]	8.7	0.8545
AT1G07040			unknown protein		Lus10030795 [exp]	11.3	0.8525
AT5G17280			unknown protein		Lus10028356 [exp]	13.0	0.8197
AT4G36160	NAC	ANAC076, VND2	VASCULAR-RELATED NAC-DOMAIN 2,...		Lus10015312 [exp]	14.4	0.8409

Compare expression of checked genes

Lus10016385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.