Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33990 717 / 0 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 447 / 1e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 442 / 6e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 437 / 6e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 430 / 8e-146 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G30700 436 / 1e-145 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G46790 431 / 3e-145 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 432 / 9e-144 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 427 / 9e-143 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 426 / 4e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019735 [exp] 1001 / 0 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035788 [exp] 454 / 9e-153 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10017446 [exp] 448 / 7e-150 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10028837 [exp] 429 / 8e-148 AT1G11290 650 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001220 [exp] 442 / 5e-147 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 432 / 4e-146 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 435 / 8e-146 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 438 / 2e-145 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035815 [exp] 434 / 9e-145 AT4G30700 1026 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G466066 [exp] 756 / 0 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G111900 [exp] 452 / 1e-152 AT4G33990 518 / 1e-173 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G050200 [exp] 444 / 9e-151 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G322100 [exp] 443 / 6e-150 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 445 / 7e-150 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G181800 [exp] 446 / 1e-149 AT4G30700 1025 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 448 / 2e-149 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 440 / 6e-148 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G369900 [exp] 434 / 4e-147 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 440 / 5e-147 AT3G22690 582 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10016387 pacid=23161865 polypeptide=Lus10016387 locus=Lus10016387.g ID=Lus10016387.BGIv1.0 annot-version=v1.0 ATGCAACGAGCTGGAATCCAACCTGATGTGTTTACACTCGTTAGTTTGGCTTCGGTTGTTTCTCAGTTGAATGATCACAAGAATGCCAGGTCTCTTCATG GATTTATACTCAGGAGAGGATTTTTCAAGGAAGCTGTAATTACTGGAAATGCGGTGGTGGACATGTACGCTAAAATGGGAATCACGGAATATGCGAGGTG TGTCTTTGAACGGCTTCCTGCTAAAGATGTGGTAACATGGAACAGTTTAATTACTGGCTATGCTCAGAATGGTTTTGCAAACGAAGCTAGCGCTATATTC TCTATGATGAAAGGTTCCAAAGATATAGTCCCAAGCCAAGGTACATGGGTGAGCGTATTACCGGCATACTCCCAGCTCGGTGCTTTGCAGCAAGGAATGG GAATTCACGCACGTGTTATAAAAGACTCCCTCTGCTCAGATATTTACGTCGGAACTTGTCTAGTTGACTTGTATGGAAAGTGTGGTCGACTCGATGATGC CATGTCATTGTTTTATGAAGTGCCTAGGCAAAGTTCTGTTCCTTGGAATGCCATAATAGCTTGTCATGGAGTTCACGGGCATAGTGAGAAAGCACTTAAA TTGTTCAAAGAAATGATTGCTGAAAGGGTGAAGCCAGATCAGGTAACGTTTGTATCTTTACTATCAGCATGTAGTCATGCGGGTATGGTTAAAGAAGGAG AATGGTGCTTCCATATGATGCAAGAAGAGTATGGAATTACGCCTATTTTGAAACATTATGGCTGCATGGTTGATTTGTATGGTAGAGCTGGTCTCTTGGA TGTGGCTTTCAAGTTCATTAAAAACATGCCGATACAGCCCGATGCATCCATCTGGGGTGCTCTGATTGGTGCCTGCAGAATTCACGGAAATGTCGAGTTG GGAAAAGCTGCATCTGCTCATTTATTCGAAGTTGACCCTGAGAACGTTGGATATTATGTTTTACTATCGAATATATATGCAAAAGCAGGGAAATGGGAAG GAGTTAATGATGTGAGATCGTTGGCTCGAGGAATGGGATTGAAGAAGACTCCCGGGTGGAGCTCGATTGAAGTGGATAAGAAGGTTGATGTGTTTTACAC AGGGAACCAGAGTCATCCACTGCACAACCATATATATAAGGAGCTGAAGGAATTGCTATGCAAAATGAAAGCCAGGGGATATGTTCCGGATTTCAGCTTT GTGTTGCAGGATGTTGAGGATGATGAGAAGGAGCAGATCCTCATGAGTCACAGTGAGAGATTGGCGATTGCTTATGGAATAATAAGCACCGCGCCAAAAA GCTCTCTTCGTATCTTCAAGAATTTGCGAGTGTGTGGAGATTGCCATAGTGCGATTAAATATATTTCTGGAATTACTGGCAGGGAAATTGTCGTTAGGGA TTCCAACCGTTTTCATCACTTTCGGAATGGAAGTTGTTCTTGTGGTGATTACTGGTGA
AA sequence Show only first row Show all	>Lus10016387 pacid=23161865 polypeptide=Lus10016387 locus=Lus10016387.g ID=Lus10016387.BGIv1.0 annot-version=v1.0 MQRAGIQPDVFTLVSLASVVSQLNDHKNARSLHGFILRRGFFKEAVITGNAVVDMYAKMGITEYARCVFERLPAKDVVTWNSLITGYAQNGFANEASAIF SMMKGSKDIVPSQGTWVSVLPAYSQLGALQQGMGIHARVIKDSLCSDIYVGTCLVDLYGKCGRLDDAMSLFYEVPRQSSVPWNAIIACHGVHGHSEKALK LFKEMIAERVKPDQVTFVSLLSACSHAGMVKEGEWCFHMMQEEYGITPILKHYGCMVDLYGRAGLLDVAFKFIKNMPIQPDASIWGALIGACRIHGNVEL GKAASAHLFEVDPENVGYYVLLSNIYAKAGKWEGVNDVRSLARGMGLKKTPGWSSIEVDKKVDVFYTGNQSHPLHNHIYKELKELLCKMKARGYVPDFSF VLQDVEDDEKEQILMSHSERLAIAYGIISTAPKSSLRIFKNLRVCGDCHSAIKYISGITGREIVVRDSNRFHHFRNGSCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Lus10016387 [exp]	0	1
AT5G53770			Nucleotidyltransferase family ...		Lus10032691 [exp]	5.1	0.8263
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10018113 [exp]	6.5	0.8152
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10033685 [exp]	14.4	0.8129
AT5G15640			Mitochondrial substrate carrie...		Lus10041498 [exp]	16.7	0.7890
AT5G15550			Transducin/WD40 repeat-like su...		Lus10032344 [exp]	17.7	0.8050
AT5G15270			RNA-binding KH domain-containi...		Lus10005232 [exp]	21.4	0.8124
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10034109 [exp]	22.2	0.7555
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10027219 [exp]	25.2	0.7976
AT2G06000			Pentatricopeptide repeat (PPR)...		Lus10004533 [exp]	25.6	0.7907
AT5G40660			ATP12 protein-related (.1)		Lus10024202 [exp]	27.6	0.7862

Compare expression of checked genes

Lus10016387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.