Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19440 309 / 3e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 303 / 2e-98 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09500 296 / 4e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G51410 297 / 8e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 292 / 7e-95 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09510 292 / 1e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 282 / 8e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 234 / 2e-72 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT1G68540 211 / 1e-63 TKPR2, CCRL6 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G02400 207 / 2e-62 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019732 [exp] 444 / 2e-154 AT5G19440 349 / 3e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016389 [exp] 436 / 2e-151 AT1G09480 320 / 1e-109 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019734 [exp] 426 / 2e-147 AT1G09480 286 / 4e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008668 [exp] 311 / 5e-102 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 305 / 1e-99 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 301 / 3e-98 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024130 [exp] 315 / 5e-97 AT5G09860 933 / 0.0 nuclear matrix protein-related (.1.2) Lus10002300 [exp] 298 / 5e-97 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 293 / 4e-95 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G057800 [exp] 335 / 5e-111 AT5G19440 435 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057500 [exp] 327 / 4e-108 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 310 / 8e-102 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G052000 [exp] 303 / 4e-99 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G256400 [exp] 299 / 2e-97 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G120200 [exp] 236 / 2e-73 AT1G68540 505 / 0.0 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G138600 [exp] 227 / 2e-69 AT4G35420 535 / 0.0 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Potri.010G125400 [exp] 221 / 3e-67 AT1G68540 428 / 1e-151 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G004100 [exp] 215 / 3e-65 AT2G33590 438 / 1e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G257700 [exp] 214 / 6e-64 AT2G33590 400 / 4e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01073 [flax] [poplar] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10016388 pacid=23161871 polypeptide=Lus10016388 locus=Lus10016388.g ID=Lus10016388.BGIv1.0 annot-version=v1.0 ATGGCTGGAGATGGGAAAAAAGTTTGTGTTACAGGAGCATCAGGATTCATTGCTTCATGGATGGTTAAGGTCCTCCTCCAACGTGGCTACACCGTCAACG CCACAGTTCGCGACCTCGCATCCGATAGTATTTTTGAAAATATTTACATCATGAATCCGCCCTTTCCGGTAAAGCATTCGAATTTTCGCACAGGGGACGT GAAGAAAACTGATCATTTGATTGCACTTGATGGAGCGAAGGAAAGACTTCACATCTTTGAAGCCAACCTGATCAAGGATGGATCTTTCGACGGGGCAGTC GATGGATGTGAAGGTGTTTTTCATACCGCATCTCCGGTTAATTTATCCATACCCTCCGACGCACAGGCCGAGTTAGTTGAGCCTGCAGTGAAGGGAACCC TCAATGTCCTGAAATCATGCACGAAATACCAATCCGTGAAGAGAGTTGTCCTAACATCTTCCATTGCTACAGTTGGCTACACCGGGAAGCCCTTGGAATC CGGATCAGTGATCGACGAGACTTGGTATTCGGATCCAAGCTTTTGTGAACAAGTGAAGCTTTGGTACGCATATTCAAAAACCTTGGCTGAGAAGGCAGCC TGGAGCTTTGCAGAAGAGCATGGCATTGATTTGGTAACGATAAATCCGGTTTTCGTTATCGGACCTATGTTACAGCCAACTCTCAATGAAACAGTGGAAA TGATTCTCAACTTCATCAAAGAACCTCACAAGTCGGATACCAGCCAACCGTATCCTTATGTTGATGTCAGAGATGTCGCAGAGGCACACGTCAGAGCTTT CGAGACTAGTACAGCTGCTGGAAGGTACATTTTGTCTGCCAGCGTTCATAGCTACCACCAGGTTTTCTTAAAAGGCAATAAACGTCGGTTCCGCGTGTAT CCATGCAAAAACCGAAACTCCAAAATCCCACCACCCGACCAGATCCCGTCCCAGCACTGCCGTCGCTGCCTCCGGTGTTCTCAAATTAATCATCAGAAGA TTCCCGCCAAACCCAAGCTGACCACCAGTTGCCCTTGCGATAACCGAGTTGTCGCTCCTCCGGAACACGGAGGCGTCTACTGGGTCGCCATAAATGCGTG CTGTCGCTTCAGCCCCAACAAAGTCGAGTGTGACTGTCCAGTTCGCCCAACCGGTTTGGTTGTTGTTCAGTACACGAAGGCTGAAACGACTTCGACTACT CGGGGACCCAAGTCAAACATAAGCGGTAGGAAAGCCACACTGAATCCTACGATAGAGCAGGATGCTAGGACCATGCAACAGAAGAAGCAGGCAACTGAAA CTGATTCCGTCAGCTTCAAGGCCAGGGGAAAACTGCACATCTTTGAAGCCAACCTGATCAAGGATGGATCTTTCGACAATGCAGTCGATGGATGCGGAGG TGTTTTCCATACCGCCTCTCCGGTTAATTTATTATCCATACCCTCTGAGTCTGACCCACAGGCAGAACTAGTTGAGCCTGCAGTGAAGGGAACTCTAAAT GTCCTGAAATCATGCACGAAATACCAATCCGTGAAGAGAGTTGTCTTAACATCTTCCGTTGCTACAGTTGCCTACACCGGGAAGACCTTGAAATCCGGCT CGGTGATCGACGAGACATGGTATTCGGATCCAAGCGTTTGCGTGCAACTGAAGGTAGGGGAATCAATAATGCTGACATAA
AA sequence Show only first row Show all	>Lus10016388 pacid=23161871 polypeptide=Lus10016388 locus=Lus10016388.g ID=Lus10016388.BGIv1.0 annot-version=v1.0 MAGDGKKVCVTGASGFIASWMVKVLLQRGYTVNATVRDLASDSIFENIYIMNPPFPVKHSNFRTGDVKKTDHLIALDGAKERLHIFEANLIKDGSFDGAV DGCEGVFHTASPVNLSIPSDAQAELVEPAVKGTLNVLKSCTKYQSVKRVVLTSSIATVGYTGKPLESGSVIDETWYSDPSFCEQVKLWYAYSKTLAEKAA WSFAEEHGIDLVTINPVFVIGPMLQPTLNETVEMILNFIKEPHKSDTSQPYPYVDVRDVAEAHVRAFETSTAAGRYILSASVHSYHQVFLKGNKRRFRVY PCKNRNSKIPPPDQIPSQHCRRCLRCSQINHQKIPAKPKLTTSCPCDNRVVAPPEHGGVYWVAINACCRFSPNKVECDCPVRPTGLVVVQYTKAETTSTT RGPKSNISGRKATLNPTIEQDARTMQQKKQATETDSVSFKARGKLHIFEANLIKDGSFDNAVDGCGGVFHTASPVNLLSIPSESDPQAELVEPAVKGTLN VLKSCTKYQSVKRVVLTSSVATVAYTGKTLKSGSVIDETWYSDPSVCVQLKVGESIMLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10016388 [exp]	0	1
AT3G02645			Plant protein of unknown funct...		Lus10019721 [exp]	1.4	0.9553
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10029252 [exp]	2.8	0.9562
AT1G11655			unknown protein		Lus10001141 [exp]	3.3	0.9319
AT5G40240			nodulin MtN21 /EamA-like trans...		Lus10039481 [exp]	4.2	0.9339
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10012548 [exp]	4.6	0.9473
AT4G27870			Vacuolar iron transporter (VIT...		Lus10022771 [exp]	4.9	0.9440
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10021505 [exp]	5.8	0.9292
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10033327 [exp]	6.5	0.9386
AT2G36090			F-box family protein (.1)		Lus10021330 [exp]	7.3	0.9017
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Lus10003039 [exp]	7.7	0.9418

Compare expression of checked genes

Lus10016388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.