Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19440 296 / 2e-100 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 291 / 2e-98 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 292 / 3e-98 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 285 / 5e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09500 277 / 2e-93 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G09510 276 / 3e-92 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 271 / 1e-90 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 229 / 5e-74 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT5G58490 206 / 7e-65 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G68540 191 / 4e-59 TKPR2, CCRL6 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019732 [exp] 452 / 6e-162 AT5G19440 349 / 3e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019734 [exp] 397 / 3e-140 AT1G09480 286 / 4e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016388 [exp] 406 / 4e-140 AT5G19440 309 / 2e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008668 [exp] 305 / 8e-104 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 301 / 2e-102 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 288 / 6e-97 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002300 [exp] 286 / 3e-96 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 285 / 1e-95 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 283 / 3e-95 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G057800 [exp] 330 / 1e-113 AT5G19440 435 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057500 [exp] 306 / 2e-104 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G052000 [exp] 304 / 2e-103 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G256400 [exp] 293 / 3e-99 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 291 / 3e-98 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G138600 [exp] 224 / 8e-72 AT4G35420 535 / 0.0 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Potri.008G120200 [exp] 217 / 3e-69 AT1G68540 505 / 0.0 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.010G125400 [exp] 204 / 2e-64 AT1G68540 428 / 1e-151 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.005G257700 [exp] 194 / 1e-59 AT2G33590 400 / 4e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G004100 [exp] 191 / 2e-59 AT2G33590 438 / 1e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10016389 pacid=23161809 polypeptide=Lus10016389 locus=Lus10016389.g ID=Lus10016389.BGIv1.0 annot-version=v1.0 ATGGCTGGAGGAGAAGGCAAAACAGTTTGTGTTACAGGAGCATCAGGGTTCATTGCTTCATGGCTGGTTAAGGTCCTGCTCCAACGTGGCTACACGGTCA ACGCCACAGTTCGAGACCTTGGGGACAGAAAGAAAACTGACCATTTGCTTGCATTTGATGGAGCAAAGGATAGACTTCATATCTTTGAAGCAGACCTGCT AAAGGATGGATCTTTCGACATCGCAGTCGATGGGTGTGAAGGTGTTTTCCATACTGCTTCTCCGGTTAATTTATCCGTATCCTCAGATCCAAAGGCAGAG CTAGTTGAGCCTGCATTGAAGGGAACTCTCAATGTTCTGAAATCATGCAGAAAATATCAATCCGTGAAGAGAGTTGTCTTAACATCTTCCATTTCTGCAG CAGCCTACACCGGGAAGCCCTTGGAATCCGGATCAGTGATCGACGAGACTTGGTATTCCGATCCAAGCCTTTGGTACGCGAATTCGAAAACCTTGGCCGA GAAGGCAGCCTGGAGCTTTGCAAAAGAGCATGGCATTGATCTGGTGGCAATAAATCCGGCTTTCGTTATCGGTCCTCCGTTACAGCCAACCCTCAATGAC ACACTGGAAATGATTCTAAACTTCATCAAAGAACCTCACAAGTCGAATCATGGCAGCCAACCGTATCCTTCGGTTGATGTCAGAGATGTCGCAGATGCAC ATGTCAGAGCTTTCGAGATTAATACAGCTTCCGGAAGATACATTTTGTCGGCCAGTGTTCATAGCTACCCAAAGGTGTTCAAAATCATCAATCAACTTTA TCCTGTGCTGAACATTCCTCATATGTGA
AA sequence Show only first row Show all	>Lus10016389 pacid=23161809 polypeptide=Lus10016389 locus=Lus10016389.g ID=Lus10016389.BGIv1.0 annot-version=v1.0 MAGGEGKTVCVTGASGFIASWLVKVLLQRGYTVNATVRDLGDRKKTDHLLAFDGAKDRLHIFEADLLKDGSFDIAVDGCEGVFHTASPVNLSVSSDPKAE LVEPALKGTLNVLKSCRKYQSVKRVVLTSSISAAAYTGKPLESGSVIDETWYSDPSLWYANSKTLAEKAAWSFAKEHGIDLVAINPAFVIGPPLQPTLND TLEMILNFIKEPHKSNHGSQPYPSVDVRDVADAHVRAFEINTASGRYILSASVHSYPKVFKIINQLYPVLNIPHM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09480			NAD(P)-binding Rossmann-fold s...		Lus10016389 [exp]	0	1
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021136 [exp]	2.4	0.8675
AT5G17680			disease resistance protein (TI...		Lus10003749 [exp]	3.2	0.8908
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Lus10039006 [exp]	3.9	0.8686
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032026 [exp]	13.4	0.8884
AT1G65610		ATGH9A2 ,KOR2	KORRIGAN 2, ARABIDOPSIS THALIA...		Lus10026863 [exp]	17.0	0.8776
AT5G51160			Ankyrin repeat family protein ...		Lus10041537 [exp]	23.1	0.8747
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006611 [exp]	23.5	0.8503
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Lus10027458 [exp]	27.7	0.8440
AT2G17660			RPM1-interacting protein 4 (RI...		Lus10025949 [exp]	29.5	0.7408
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10012575 [exp]	29.9	0.8617

Compare expression of checked genes

Lus10016389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.