Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13600 226 / 5e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 218 / 3e-62 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G21090 206 / 2e-59 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G01030 209 / 4e-59 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G02750 206 / 6e-58 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G18840 201 / 6e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G53600 199 / 8e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G19020 197 / 4e-55 MEF18 mitochondrial editing factor 18 (.1) AT5G46460 196 / 5e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20770 196 / 1e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019731 [exp] 959 / 0 AT2G13600 436 / 3e-143 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008607 [exp] 224 / 4e-67 AT1G53600 498 / 6e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 214 / 5e-61 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10015898 [exp] 210 / 1e-59 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000213 [exp] 206 / 1e-58 AT2G13600 435 / 8e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 203 / 1e-57 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022368 [exp] 204 / 2e-56 AT2G13600 414 / 2e-129 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013540 [exp] 201 / 3e-56 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030908 [exp] 203 / 6e-56 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G085500 [exp] 228 / 5e-66 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.010G029900 [exp] 221 / 7e-64 AT5G19020 789 / 0.0 mitochondrial editing factor 18 (.1) Potri.012G018800 [exp] 221 / 6e-63 AT2G13600 463 / 3e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 215 / 3e-61 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G075300 [exp] 213 / 6e-61 AT3G26540 815 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G087300 [exp] 207 / 1e-58 AT1G32415 851 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G217900 [exp] 206 / 1e-58 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.010G136200 [exp] 206 / 3e-58 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G075200 [exp] 205 / 3e-58 AT1G77010 835 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G085800 [exp] 204 / 1e-57 AT4G02750 491 / 3e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10016390 pacid=23161801 polypeptide=Lus10016390 locus=Lus10016390.g ID=Lus10016390.BGIv1.0 annot-version=v1.0 ATGAAGATTGTGCAAACAGGAAAAGTTACAAGTTGCTTGCTTCTAATCGATTTTGTTACTTTCTCCGTCGGAGCCGAAGAACTGAAAGCTCGTTACATGA GAAGTGCCCTAAAACCTCTGCTTGCAACAAATCCAGCTGCAAATTTTCAAGGCTACCTGAGGTCATGCTTGTCTGCATTCAAAACCATCACCAGGGAAGG GGCTATCTCCCAAGGAACCATCCTCCATGGCTATTTGATCAAAACCGGTGCTTCCTCGGAGAGGTACTTATCCGTGAAGCTTTTGATAATGTACCTCACT TGTCGGAGAACAGCTGAGGCTCATCAGGTTACAAAGGAATTTGACGGGTTTGATCTCGTCGTGCATAACTGTTTGATCAATGCCAATGTACAATGGGGGA ATCTGGATGAGGCACGTAGGTTGTTCGACGAAATGCCTGAGAGAAACGAGGTGTCATGGACCACGGTGATTTCAGGTTTGATGAAGTTCGGTAGAGATAA AGAGTCGTTGGTGTATTTTCGGAGGAACCCGTTCCAGGGTGTGGTTTCCTGGACGGCAGTGATTAGTGGGTTTGTGCAGAACGGGCCTAACGAGGTTACC ATCACATCTGTTCTCAAAGCCTGCTGTGAAGCCGGTGATTTCACGTTGGGAATGAGTGTTTTGGGTTTGACTGTTAAGATTGGACTTGAACGTACACTGT CAGTTTCTAATTCTTTGATTACACTGTTCTTGAGGATGGGTGAAATATATATGAGCAGGCGAGTGTTTGATAGCATGGTGAGTAGAGATGTTGTCTCTTG GACAGCAATATTAGATATGTACGTCAAGATTGGGGATTTATCCGAGGCAAGGAGAATCTTTGACGAGATGCCTGAGAGGAATGAAGTATCTTGGAGTGCA ATGATTGCCAGGTATAGCCAGAGTGGTCATCCGGAGGATGCATTGAAACTCTTCCATCAAATGATATCGCACGGTTTCAAAGCTAATGTTTCATGTCTCT CTACTATTATAAGTGCATTGAGCGGCATCAAGGCTCTACAAGCAGGTATGAACATCCATGGAAATATTGTGAAAATTGGGATGGATAGAGATGTTTATAT CTCTAGCTCCCTGATTGACCTTTACTGTAAATGTGGCCAGCCAAACAATGGACGGTTGTTATTCGATTCTACTCTGGAGAAGAATGTTGTCAGCTGGAAT TCCATGGTTGCTGGATATGGTCTGAATGAGCAAATACAGGAAGCTAACTTGCTCTTTGACATCATGCCATCTTGTAACAGCGTTTCATGGAGTGCTCTGA TCGCTGGTTACTTAGACTGCAAACAGTTTGATAAAGTGTTTGAGTTATTTGACCAGATGCTTTTATTGGGAGAGCATCCAAATAAATCTACATTCTCTTC TTTGCTATGTGCTTGTGCGAGTACAACCTCTCTAGGAAAAGGGAAGGATCTCCATGGGAAGACGATCAAACTCGGGATTCAATCAGATTTATTTGTTGGC ACTGCACTCACTTACATGTATGCAAAATCCGGCGACATTGAGAGTGCTTGCAGAATCTTCAACAGGATGACAGTGATTGATACCTATCCATAG
AA sequence Show only first row Show all	>Lus10016390 pacid=23161801 polypeptide=Lus10016390 locus=Lus10016390.g ID=Lus10016390.BGIv1.0 annot-version=v1.0 MKIVQTGKVTSCLLLIDFVTFSVGAEELKARYMRSALKPLLATNPAANFQGYLRSCLSAFKTITREGAISQGTILHGYLIKTGASSERYLSVKLLIMYLT CRRTAEAHQVTKEFDGFDLVVHNCLINANVQWGNLDEARRLFDEMPERNEVSWTTVISGLMKFGRDKESLVYFRRNPFQGVVSWTAVISGFVQNGPNEVT ITSVLKACCEAGDFTLGMSVLGLTVKIGLERTLSVSNSLITLFLRMGEIYMSRRVFDSMVSRDVVSWTAILDMYVKIGDLSEARRIFDEMPERNEVSWSA MIARYSQSGHPEDALKLFHQMISHGFKANVSCLSTIISALSGIKALQAGMNIHGNIVKIGMDRDVYISSSLIDLYCKCGQPNNGRLLFDSTLEKNVVSWN SMVAGYGLNEQIQEANLLFDIMPSCNSVSWSALIAGYLDCKQFDKVFELFDQMLLLGEHPNKSTFSSLLCACASTTSLGKGKDLHGKTIKLGIQSDLFVG TALTYMYAKSGDIESACRIFNRMTVIDTYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10016390 [exp]	0	1
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10027366 [exp]	3.0	0.8717
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10013283 [exp]	3.0	0.8491
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10035676 [exp]	4.5	0.8253
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Lus10031848 [exp]	4.6	0.8231
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10030932 [exp]	5.7	0.8615
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10005207 [exp]	6.0	0.8255
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10008830 [exp]	9.5	0.8132
AT1G79120			Ubiquitin carboxyl-terminal hy...		Lus10032172 [exp]	9.9	0.8212
AT4G13650			Pentatricopeptide repeat (PPR)...		Lus10040997 [exp]	10.1	0.8072
AT2G29260			NAD(P)-binding Rossmann-fold s...		Lus10040730 [exp]	12.0	0.7931

Compare expression of checked genes

Lus10016390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.