Plant FIBer expression Database

Lus10016391 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G57450 65 / 2e-15 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019730
[exp]
123 / 1e-38 AT3G57450 66 / 8e-16 unknown protein
Lus10029496
[exp]
78 / 6e-21 AT3G57450 64 / 6e-15 unknown protein
Lus10035455
[exp]
62 / 3e-14 AT3G57450 69 / 3e-17 unknown protein
Lus10031071
[exp]
61 / 5e-14 AT3G57450 69 / 5e-17 unknown protein
Lus10042063
[exp]
58 / 2e-12 AT3G57450 67 / 1e-15 unknown protein
Lus10018070
[exp]
56 / 6e-12 AT3G57450 66 / 1e-15 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G263404
[exp]
63 / 8e-15 AT3G57450 64 / 3e-15 unknown protein
Potri.016G055901
[exp]
60 / 2e-13 AT3G57450 70 / 2e-17 unknown protein
Potri.009G058500
[exp]
56 / 7e-12 AT3G57450 47 / 1e-08 unknown protein
Potri.012G032500
[exp]
51 / 5e-10 AT3G57450 66 / 2e-15 unknown protein
Potri.006G050800
[exp]
50 / 7e-10 AT3G57450 59 / 4e-13 unknown protein
PFAM info
Representative CDS sequence
>Lus10016391 pacid=23161888 polypeptide=Lus10016391 locus=Lus10016391.g ID=Lus10016391.BGIv1.0 annot-version=v1.0
ATGGCGAAGTACATGGAGATCCTGGACGCGTTCAGGATTGTGGCGAGGTTTCACTCTCATTGCCCCCAGACCGCTCGGATGTACTACCACCCGCCAGCTG
ACAACCACCAGAGCCGGAACCAGAACCAGCAAGGTGCAACCGCCGGAGAAGCTGCCGTCGTGGAAGCCAAATCGGGTTATTACGCGGCGTTGAAAGGTGT
GAATCAGTTCGTTGTTGACGTCAGAGAGCTCGTTTAA
AA sequence
>Lus10016391 pacid=23161888 polypeptide=Lus10016391 locus=Lus10016391.g ID=Lus10016391.BGIv1.0 annot-version=v1.0
MAKYMEILDAFRIVARFHSHCPQTARMYYHPPADNHQSRNQNQQGATAGEAAVVEAKSGYYAALKGVNQFVVDVRELV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G57450 unknown protein Lus10016391
[exp]
0 1
AT5G03700 D-mannose binding lectin prote... Lus10023868
[exp]
5.1 0.9274
AT3G57870 SCE1A, SCE1, AH... SUMO CONJUGATING ENZYME 1A, EM... Lus10019328
[exp]
10.2 0.9104
AT5G59613 unknown protein Lus10005899
[exp]
12.1 0.9131
AT4G05390 ATRFNR1 root FNR 1 (.1.2) Lus10023266
[exp]
16.6 0.9152
AT1G11320 unknown protein Lus10013574
[exp]
21.2 0.9095
AT1G09740 Adenine nucleotide alpha hydro... Lus10015896
[exp]
23.5 0.9078
AT4G11260 RPR1, ETA3, EDM... ENHANCER OF TIR1-1 AUXIN RESIS... Lus10039297
[exp]
24.1 0.8904
AT1G05260 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Pe... Lus10032926
[exp]
27.6 0.9000
AT1G05560 UGT75B1, UGT1 UDP-GLUCOSE TRANSFERASE 1, UDP... Lus10021610
[exp]
29.5 0.8965
AT1G79870 D-isomer specific 2-hydroxyaci... Lus10037552
[exp]
30.9 0.9025

Lus10016391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.