Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05320 362 / 7e-123 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G38540 358 / 2e-121 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT2G35660 219 / 6e-67 CTF2B, CTF2A FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3) AT4G15760 202 / 4e-61 MO1 monooxygenase 1 (.1.2) AT2G29720 190 / 5e-56 CTF2B FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G15765 106 / 4e-26 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G67030 69 / 2e-12 NPQ2, LOS6, IBS3, ATZEP, ATABA1, ABA1 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016398 [exp] 674 / 0 AT4G38540 358 / 1e-119 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10019729 [exp] 637 / 0 AT4G38540 400 / 4e-138 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034467 [exp] 502 / 4e-178 AT4G38540 418 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034475 [exp] 385 / 5e-132 AT5G05320 407 / 2e-140 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10025068 [exp] 373 / 3e-127 AT5G05320 410 / 1e-141 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10019728 [exp] 352 / 4e-120 AT5G05320 208 / 4e-64 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10019719 [exp] 350 / 5e-120 AT5G05320 176 / 3e-52 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034468 [exp] 301 / 8e-100 AT5G05320 232 / 7e-73 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10025073 [exp] 266 / 8e-88 AT5G05320 213 / 2e-67 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G176950 [exp] 427 / 1e-148 AT4G38540 413 / 4e-143 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.004G176750 [exp] 426 / 6e-148 AT4G38540 419 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.001G307500 [exp] 278 / 3e-90 AT4G38540 295 / 1e-96 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003400 [exp] 266 / 1e-85 AT4G38540 283 / 4e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003600 [exp] 264 / 3e-84 AT4G38540 277 / 3e-89 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003700 [exp] 257 / 6e-82 AT4G38540 256 / 9e-82 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003300 [exp] 254 / 6e-81 AT5G05320 272 / 1e-87 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003500 [exp] 254 / 6e-81 AT5G05320 273 / 4e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003200 [exp] 244 / 3e-77 AT4G38540 268 / 2e-86 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003800 [exp] 243 / 2e-76 AT5G05320 273 / 3e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01494 [flax] [poplar] FAD_binding_3 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10016392 pacid=23161841 polypeptide=Lus10016392 locus=Lus10016392.g ID=Lus10016392.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCGTTGCAAGAAGAAGAAAATGATGTAGTGATTGTCGGAGCTGGCATAGCCGGGCTCGCCACATCATTAGCTCTCCACAGACTCGGAATCA GAAGTCTGGTGTTGGAATCATCATCGAGTTTGAGGATCACTGGGTTTTCTATGTGTGTGTGGACCAACGCTTGGAAAGCTCTGGACGCTCTTGGTGTTGG GGATGCCCTTCGCCGACAACATCAGCTGCTTGATGGAATGGTGGTTGCTTCGACGGTTACAGGACAGACCGTCGTCCAGAAGTCCCTTACTGATGGAGGA CACGAATTCCGATGTGTGCAAAGGAAACTCCTGCTTGAAGCGATGGTGAAGGAGCTGCCCAATGGTACTGTAAGGTACTCTTCCAAACTGGTTTCCATGG AGGAATTGGGCAGCTTCAAGCTGCTGCATCTTGTCGATGGTACTGTCATCAAAACGAAGGTGTTGATTGGCTGCGACGGAGTGAATTCCACGGTGGCAAA GTGGCTAGGAATGAACGAACCAGTCGTTTCAGAGAGAGTACAAGTTAGAGGTTCTTCAGTATTCCCAAAAGGCCATGGCTTTGCCTACAAGCTCTTCATG TTTGCCGGAAAGGGTTTTCGAGCAGGTTGTGTCCCTTGTGATGATAAAATCATCTACTGGTATTTCTCTTGGACACCCTCTATCCAAGAAAGGGATCTCC AAGATAACCCTTCCAGGATGAAAGAATATCTACTGAGCAAACTTCAGACTGCACTCGACATGAGGAGAGTTGTCGAGAACACCGAGTTAGATATGATGAT GCTGGCTCCAGTATGCTACCGAAATCCAACGGAACTCTTGTGGAAGAAGTTAACAAGAGACAACGTCTGTGTTGCAGGGGATGCCTTGCATTCCATGATT CCGGATATCGGCCAAGGAGGCTGCGCCGCCTTGGAAGATAGTGTCACTCTTGGCAGGTGCCTTGCAGAAGCCTTCAATAGGAGAACAGGTATGGAAGAAG AGTACAACAAAAGAATTCAGCTTGGACTGAATAACTACGTCAAAGAAAGGAGATGGAGAAGTTTTAAGCTCATGATGGCATCTCGTTTGGTGAGTATCGT GCGAGGATTCGATGGAAGGATCGCCACTTTTCTGAGGGATCGTGTCGTGGCTAAGTTTCTGGGCGGTATGTCGTTGAAGATTGCAGAGTTTGATTGCGGG AAACTTAGTTAG
AA sequence Show only first row Show all	>Lus10016392 pacid=23161841 polypeptide=Lus10016392 locus=Lus10016392.g ID=Lus10016392.BGIv1.0 annot-version=v1.0 MAAALQEEENDVVIVGAGIAGLATSLALHRLGIRSLVLESSSSLRITGFSMCVWTNAWKALDALGVGDALRRQHQLLDGMVVASTVTGQTVVQKSLTDGG HEFRCVQRKLLLEAMVKELPNGTVRYSSKLVSMEELGSFKLLHLVDGTVIKTKVLIGCDGVNSTVAKWLGMNEPVVSERVQVRGSSVFPKGHGFAYKLFM FAGKGFRAGCVPCDDKIIYWYFSWTPSIQERDLQDNPSRMKEYLLSKLQTALDMRRVVENTELDMMMLAPVCYRNPTELLWKKLTRDNVCVAGDALHSMI PDIGQGGCAALEDSVTLGRCLAEAFNRRTGMEEEYNKRIQLGLNNYVKERRWRSFKLMMASRLVSIVRGFDGRIATFLRDRVVAKFLGGMSLKIAEFDCG KLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10016392 [exp]	0	1
AT5G25940			early nodulin-related (.1)		Lus10033027 [exp]	4.1	0.8007
AT2G42430	AS2	ASL18, LBD16	ASYMMETRIC LEAVES2-LIKE 18, la...		Lus10033872 [exp]	8.2	0.8474
AT1G26380			FAD-binding Berberine family p...		Lus10023374 [exp]	8.7	0.7543
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10001776 [exp]	14.1	0.7688
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10029826 [exp]	22.2	0.8245
AT5G10050			NAD(P)-binding Rossmann-fold s...		Lus10019684 [exp]	24.9	0.7967
AT3G44350	NAC	ANAC061	NAC domain containing protein ...		Lus10004206 [exp]	26.4	0.7747
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10020834 [exp]	33.4	0.7148
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10023024 [exp]	37.4	0.8279
AT5G42510			Disease resistance-responsive ...		Lus10000376 [exp]	54.1	0.7390

Compare expression of checked genes

Lus10016392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.