Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08030 489 / 2e-174 Protein of unknown function, DUF642 (.1.2) AT2G41800 413 / 5e-144 Protein of unknown function, DUF642 (.1) AT2G41810 410 / 3e-143 Protein of unknown function, DUF642 (.1) AT5G25460 385 / 6e-133 Protein of unknown function, DUF642 (.1) AT4G32460 384 / 1e-132 Protein of unknown function, DUF642 (.1.2) AT5G11420 384 / 1e-132 Protein of unknown function, DUF642 (.1) AT1G80240 362 / 5e-124 Protein of unknown function, DUF642 (.1) AT1G29980 293 / 1e-96 Protein of unknown function, DUF642 (.1.2) AT2G34510 289 / 6e-95 Protein of unknown function, DUF642 (.1) AT5G14150 117 / 2e-29 Protein of unknown function, DUF642 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016394 [exp] 603 / 0 AT3G08030 469 / 2e-166 Protein of unknown function, DUF642 (.1.2) Lus10019727 [exp] 552 / 0 AT3G08030 392 / 3e-137 Protein of unknown function, DUF642 (.1.2) Lus10029501 [exp] 538 / 0 AT3G08030 537 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10029502 [exp] 535 / 0 AT3G08030 475 / 1e-168 Protein of unknown function, DUF642 (.1.2) Lus10039602 [exp] 533 / 0 AT3G08030 530 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10029503 [exp] 529 / 0 AT3G08030 465 / 4e-166 Protein of unknown function, DUF642 (.1.2) Lus10019723 [exp] 416 / 4e-146 AT3G08030 332 / 3e-113 Protein of unknown function, DUF642 (.1.2) Lus10013112 [exp] 399 / 3e-138 AT5G11420 606 / 0.0 Protein of unknown function, DUF642 (.1) Lus10008080 [exp] 392 / 1e-135 AT5G11420 604 / 0.0 Protein of unknown function, DUF642 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G058800 [exp] 520 / 0 AT3G08030 498 / 9e-178 Protein of unknown function, DUF642 (.1.2) Potri.001G263900 [exp] 514 / 0 AT3G08030 515 / 0.0 Protein of unknown function, DUF642 (.1.2) Potri.006G050300 [exp] 455 / 1e-160 AT2G41810 530 / 0.0 Protein of unknown function, DUF642 (.1) Potri.016G056100 [exp] 446 / 5e-157 AT2G41810 520 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050400 [exp] 442 / 1e-155 AT2G41810 521 / 0.0 Protein of unknown function, DUF642 (.1) Potri.018G031100 [exp] 400 / 2e-138 AT5G11420 600 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G250100 [exp] 397 / 4e-138 AT5G11420 598 / 0.0 Protein of unknown function, DUF642 (.1) Potri.003G059800 [exp] 365 / 9e-125 AT5G25460 513 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G174400 [exp] 358 / 2e-122 AT5G25460 507 / 0.0 Protein of unknown function, DUF642 (.1) Potri.011G087500 [exp] 302 / 4e-100 AT1G29980 578 / 0.0 Protein of unknown function, DUF642 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF04862 [flax] [poplar] DUF642 Protein of unknown function (DUF642)
Representative CDS sequence Show only first row Show all	>Lus10016393 pacid=23161918 polypeptide=Lus10016393 locus=Lus10016393.g ID=Lus10016393.BGIv1.0 annot-version=v1.0 ATGGGTCGTCGTAGCTGCTCCTCCATCGCTGTCATTGTATTGGCATTGCTCCTCTGCTTCCATGGATGCGTTCTCTCTGCCCAGCACTTAGATGGGCTGC TACGAAACGGGAACTTCGAGCAGGCTCCAAAGCCGAGCGACATGGTGAAAACGGTAGTCAAGGGCAAGAACTCTATCCCGGGATGGGAAACCAATGGCTT GGTAGAGTTCATCTCCGGTGGACCCCAACCAGGAGGCATGTTCTTTCCCGTGGCACATGGGGTCCACGCGGTCAGGCTAGGGAACGATGCTTCTGTTTCC CAGACCATACCCAACTTGAAACCCGGATCGCTCTACGCGCTGTCCTTCGTCGCGTCGAGGACGTGCGCGCAGAACGAGGTCCTCCGGGTTGCTGTCCCTG GGCAGAGTGGGGACCTGCCGCTGCAGACATTGTACTGCAGCAACGGCGGGGACACCTACGCTTGGGGGTTCAGGGCGAGAGGGAAGGAAGCGAAGGTGGT GTTCCATAACCCTGGAACGCAGGATGATCCAGCTTGTGGTCCTCTTATTGATGCCGTTGGTATTAGGGAGCTCTTCCCTCCTCATCCCACTAGATTGAAC TTGGTGAAGAACCCAGGGTTCGAGGAAGGCCCGCGAAGGCCACAACTCAACAGCTCAAACGGCATCCTCCTCCCGCCAAACCAAGAAGACAAAGTCTCCC CGCTCCCCGGGTGGATCATCGAGTCATTGAAGGCCGTCAAGTACATAGACGCCAAGTACTACAACGTCCCCTTCGGCCAATCAGCAGTCGAGCTGGTTGC CGGGAGGGAGAGCGCCATCGCTCAGATCATCCGCACCGTCGCTACAAAACTGTACAACCTCAGGTTCACGGTGGGAGACGGGAGGAACGAGTGCCACGGG TCCATGACCGTGGTGGCGTTCGCAGCCAGGGAGAGGTTCACGGTCCCGTTCGAGTCGAAGGGCAAAGGGGAGTTCAAGACGGTGTCGTTTAAGTTCAAGG CGATTTCGAACAGGACTAGGGTCACGTTCTTTAGCTCTCAGTACCATACTAGGAAAGATGACTTTGTTTCCCTCTGTGGTCCTATTGTTGATCAAGTGGT GGTTCTCCCCTTGAAGGGTTGA
AA sequence Show only first row Show all	>Lus10016393 pacid=23161918 polypeptide=Lus10016393 locus=Lus10016393.g ID=Lus10016393.BGIv1.0 annot-version=v1.0 MGRRSCSSIAVIVLALLLCFHGCVLSAQHLDGLLRNGNFEQAPKPSDMVKTVVKGKNSIPGWETNGLVEFISGGPQPGGMFFPVAHGVHAVRLGNDASVS QTIPNLKPGSLYALSFVASRTCAQNEVLRVAVPGQSGDLPLQTLYCSNGGDTYAWGFRARGKEAKVVFHNPGTQDDPACGPLIDAVGIRELFPPHPTRLN LVKNPGFEEGPRRPQLNSSNGILLPPNQEDKVSPLPGWIIESLKAVKYIDAKYYNVPFGQSAVELVAGRESAIAQIIRTVATKLYNLRFTVGDGRNECHG SMTVVAFAARERFTVPFESKGKGEFKTVSFKFKAISNRTRVTFFSSQYHTRKDDFVSLCGPIVDQVVVLPLKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08030			Protein of unknown function, D...		Lus10016393 [exp]	0	1
AT3G24750			unknown protein		Lus10038162 [exp]	1.4	0.9776
AT3G19430			late embryogenesis abundant pr...		Lus10021837 [exp]	1.7	0.9718
AT3G24750			unknown protein		Lus10025939 [exp]	2.8	0.9736
AT4G23740			Leucine-rich repeat protein ki...		Lus10027568 [exp]	3.2	0.9610
AT4G34800			SAUR-like auxin-responsive pro...		Lus10007563 [exp]	3.9	0.9580
AT4G33590			unknown protein		Lus10041131 [exp]	4.5	0.9705
AT3G05390			unknown protein		Lus10029907 [exp]	5.3	0.9717
AT2G24400			SAUR-like auxin-responsive pro...		Lus10035716 [exp]	6.9	0.9624
AT3G19200			unknown protein		Lus10019867 [exp]	8.1	0.9472
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10028992 [exp]	10.1	0.9655

Compare expression of checked genes

Lus10016393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.