Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08030 459 / 3e-162 Protein of unknown function, DUF642 (.1.2) AT2G41800 397 / 1e-137 Protein of unknown function, DUF642 (.1) AT2G41810 393 / 4e-136 Protein of unknown function, DUF642 (.1) AT4G32460 376 / 2e-129 Protein of unknown function, DUF642 (.1.2) AT5G11420 374 / 7e-129 Protein of unknown function, DUF642 (.1) AT5G25460 373 / 2e-128 Protein of unknown function, DUF642 (.1) AT1G80240 338 / 9e-115 Protein of unknown function, DUF642 (.1) AT1G29980 292 / 2e-96 Protein of unknown function, DUF642 (.1.2) AT2G34510 281 / 9e-92 Protein of unknown function, DUF642 (.1) AT5G14150 124 / 9e-32 Protein of unknown function, DUF642 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016393 [exp] 584 / 0 AT3G08030 490 / 1e-174 Protein of unknown function, DUF642 (.1.2) Lus10029501 [exp] 518 / 0 AT3G08030 537 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10039602 [exp] 513 / 0 AT3G08030 530 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10029503 [exp] 503 / 3e-180 AT3G08030 465 / 4e-166 Protein of unknown function, DUF642 (.1.2) Lus10019727 [exp] 503 / 5e-180 AT3G08030 392 / 3e-137 Protein of unknown function, DUF642 (.1.2) Lus10029502 [exp] 504 / 7e-180 AT3G08030 475 / 1e-168 Protein of unknown function, DUF642 (.1.2) Lus10019723 [exp] 430 / 1e-151 AT3G08030 332 / 3e-113 Protein of unknown function, DUF642 (.1.2) Lus10013112 [exp] 382 / 2e-131 AT5G11420 606 / 0.0 Protein of unknown function, DUF642 (.1) Lus10008080 [exp] 380 / 5e-131 AT5G11420 604 / 0.0 Protein of unknown function, DUF642 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G263900 [exp] 498 / 1e-177 AT3G08030 515 / 0.0 Protein of unknown function, DUF642 (.1.2) Potri.009G058800 [exp] 490 / 2e-174 AT3G08030 498 / 9e-178 Protein of unknown function, DUF642 (.1.2) Potri.006G050300 [exp] 435 / 1e-152 AT2G41810 530 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050400 [exp] 432 / 1e-151 AT2G41810 521 / 0.0 Protein of unknown function, DUF642 (.1) Potri.016G056100 [exp] 427 / 2e-149 AT2G41810 520 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G250100 [exp] 385 / 3e-133 AT5G11420 598 / 0.0 Protein of unknown function, DUF642 (.1) Potri.018G031100 [exp] 379 / 1e-129 AT5G11420 600 / 0.0 Protein of unknown function, DUF642 (.1) Potri.003G059800 [exp] 346 / 3e-117 AT5G25460 513 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G174400 [exp] 340 / 7e-115 AT5G25460 507 / 0.0 Protein of unknown function, DUF642 (.1) Potri.011G087500 [exp] 294 / 8e-97 AT1G29980 578 / 0.0 Protein of unknown function, DUF642 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF04862 [flax] [poplar] DUF642 Protein of unknown function (DUF642)
Representative CDS sequence Show only first row Show all	>Lus10016394 pacid=23161855 polypeptide=Lus10016394 locus=Lus10016394.g ID=Lus10016394.BGIv1.0 annot-version=v1.0 ATGGCGTTCTTCAGCTTCTCGTCAACAAGAAGTATTCTACTGGCGAACTTGTTTCTCCTCTGCTTCCATGGATTTGCCGCCGCCATTGGGGGTGGAGGCC ATCACTTTGATGGCCTACTGAATAATGGCAACTTCGAGCAGGCTCCAAAGCCAATCAACATGGCGAAAACGGTGGTAAAGGGGAAGAACTCGATTCCGGG ATGGCAAATCAACGGCCTAGTTGAGTTCATCTCGGGCGGACCCCAGCCAGGCGGAATGTTCTTTCCCGTGACATACGGGGTCCACGCGGTCAAGCTAGGG AACGAAGCCTCCATTTCGCAGACCATCCCAAACTTGAAACCCGGCTCGCTCTACGCACTCTCCTTTGCGGCATCAAGGACATGCGCGCAGAACGAGGTGC TCCGGGTTTCGGTCCCCGGGCTGACCGGGGACCTGCCGCTGCAGACGCTGTACAGTAGCGACGGAGGGGACACGTACGCATGGGGGTTTCGTGCTAAGGG GAGAGTGGTTAATACGGTTGTTTTCAGTAACCCTGGCGTGGATGAGGATCCTGCTTGTGGTCCGCTCATTGATGCCGTTGCCATAAGGGAGCTTTTCCCT CCTTTCCCCACTAGAGATAACTTGGTGAAGAACCCAGGGTTCGAGCAAGGCCCGCGAAGGCCGCAACTCAACAGCTCAAGCGGAATCCTCCTACCGCCAA ACCAAGAAGACGCGGTCTCCCCATTGCCCGGGTGGATGATCGAGTCCTTGAAGGCCGTCAAGTACATAGACTCCAACCACTACAACGTCCCCTTCGGGAA ATCCGCAGTCGAGCTCGTGGCCGGAAGGGAGAGCGCCATCGCTCAGATCATCCGCACCGTTGCCGAAAAACCATACACCCTCAGCTTCACCGTAGGAGAC GCCCGGAACGAATGCCACGGGTCCATGACAGTGGTGGCATTCGCGGCCAGGGAGACTTTCACGGTCCCGTTCGAGTCAAAGGGGAAAGGGGAGTATAAGA CGGTGACGTTTAAGTTCGTAGCGGTCTCGAACAGGACTAGGGTCACCTTCTTCAGCGGGCAGTATCATAACAGGAGGGATGATTTCGTCTCGTTTTGTGG TCCTGTTGTTGACCAAGTCAAAGTTGTCCCTTCAAGGGCTTGA
AA sequence Show only first row Show all	>Lus10016394 pacid=23161855 polypeptide=Lus10016394 locus=Lus10016394.g ID=Lus10016394.BGIv1.0 annot-version=v1.0 MAFFSFSSTRSILLANLFLLCFHGFAAAIGGGGHHFDGLLNNGNFEQAPKPINMAKTVVKGKNSIPGWQINGLVEFISGGPQPGGMFFPVTYGVHAVKLG NEASISQTIPNLKPGSLYALSFAASRTCAQNEVLRVSVPGLTGDLPLQTLYSSDGGDTYAWGFRAKGRVVNTVVFSNPGVDEDPACGPLIDAVAIRELFP PFPTRDNLVKNPGFEQGPRRPQLNSSSGILLPPNQEDAVSPLPGWMIESLKAVKYIDSNHYNVPFGKSAVELVAGRESAIAQIIRTVAEKPYTLSFTVGD ARNECHGSMTVVAFAARETFTVPFESKGKGEYKTVTFKFVAVSNRTRVTFFSGQYHNRRDDFVSFCGPVVDQVKVVPSRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08030			Protein of unknown function, D...		Lus10016394 [exp]	0	1
					Lus10003802 [exp]	1.7	0.9701
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10025526 [exp]	4.2	0.9600
AT3G08030			Protein of unknown function, D...		Lus10019723 [exp]	4.7	0.9671
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10041064 [exp]	4.7	0.9419
AT5G51500			Plant invertase/pectin methyle...		Lus10031719 [exp]	6.2	0.9496
					Lus10026740 [exp]	7.2	0.9635
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10008188 [exp]	7.5	0.9586
AT2G18670			RING/U-box superfamily protein...		Lus10019979 [exp]	7.9	0.9664
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030460 [exp]	8.7	0.9409
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10034374 [exp]	9.5	0.9433

Compare expression of checked genes

Lus10016394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.