Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72300 1114 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G53890 810 / 0 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT2G02220 757 / 0 ATPSKR1 phytosulfokin receptor 1 (.1) AT1G17250 610 / 0 AtRLP3 receptor like protein 3 (.1) AT1G17240 590 / 0 AtRLP2 receptor like protein 2 (.1) AT5G07280 485 / 2e-152 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G13380 484 / 3e-152 BRL3 BRI1-like 3 (.1) AT1G55610 472 / 1e-147 BRL1 BRI1 like (.1.2) AT2G01950 452 / 1e-140 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT4G39400 448 / 1e-138 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019722 [exp] 1979 / 0 AT1G72300 1189 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10009213 [exp] 799 / 0 AT5G53890 1258 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10005403 [exp] 781 / 0 AT5G53890 1248 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10038726 [exp] 456 / 1e-141 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10020835 [exp] 452 / 4e-140 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10039132 [exp] 449 / 3e-139 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10038875 [exp] 445 / 9e-137 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10005784 [exp] 441 / 9e-136 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10006817 [exp] 439 / 3e-135 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G161000 [exp] 1305 / 0 AT1G72300 1199 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G074000 [exp] 1301 / 0 AT1G72300 1215 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G116900 [exp] 832 / 0 AT5G53890 1279 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.001G398500 [exp] 823 / 0 AT5G53890 1268 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.008G144700 [exp] 793 / 0 AT2G02220 1258 / 0.0 phytosulfokin receptor 1 (.1) Potri.010G097700 [exp] 775 / 0 AT2G02220 1187 / 0.0 phytosulfokin receptor 1 (.1) Potri.010G101100 [exp] 488 / 5e-154 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.011G169600 [exp] 486 / 2e-152 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.008G140500 [exp] 482 / 8e-152 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.015G141200 [exp] 486 / 1e-151 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10016395 pacid=23161867 polypeptide=Lus10016395 locus=Lus10016395.g ID=Lus10016395.BGIv1.0 annot-version=v1.0 ATGCCACCACTTCACAAACTCAGCTCCTTTTTCATTGGGGTTTTCTGGGTAACCATTATTACTGTCCAGTTTCTTCAATCCCGAGCTCAAATTCCCGTCT GCAACTCAGTTGATCGATCTTCCCTTTTGTCCTTCTTCTCCAACATCTCTTCCACTTCCCCACCACCACTCAATTGGTCGTCACAATCGCCATCAAATTC CGATTGTTGCAGATGGGAAGGAATTCGTTGCCATCCGATTACTGGCAGAATCACTCATCTTGAGCTTCCTTTTCGAAATCTCTTCGGAACCCTATCTCTA CCATCAAATTCAAATCTTTCCACTCTTTCTCATCTCAATCTCTCTAATAATCGTCTCTACGGCAATATCCCGCCTGGATTCTTCTCCTCTCTTCCTAACC TCGAAGTTCTCGATCTCAGCTTCAATCGCCTCACCGGTCAACTCCCATTCCCAGACGACGGTGATCGTAGTAGTAGTCAAATTAAGATTGCAGATTTCTC CAGCAATCTTTTCCATGGAGAGATATCTCTCCCAGATAAGTTAGCTTGGAATAATTTGACGAGCTTCAATGTCAGCAATAACAGCTTCGTTGGGTCAATT CCTTCAGGGTTATGCCGCACTACGACGTCGTTTTTGGCTGAGCTGGACTTCTCCTTCAACGATTTCAGCGGCGGGATTCCGTACGGGTTAGGCAACTGTT CACAATTGAAGATTCTGAAAGGTGGGTTCAACAACTTGTCAGGTTTGATTCCAGATGATATCTATATGATCAACTCACTTGAGGAGCTTTCTTTATCTGT CAATCACCTCACTGGCAACATTTCCAATCAGTTGGTCAACTTGGTGAATCTCAAAAGTCTTGAGCTTTTCTCGAATCAGTTAAATGGTTCAATCCTTATA GACATTGGGAAGTTGTCAAAGCTGGAGAATTTGCAGCTTCATGTGAATAATCTGACTGGTCCTTTGCCTCCATCGCTGTCGAATTGTACGAATTTGGTAA CTTTGATCTTGAGGGTCAACTTATTGACAGGTCGGATTGATGAGTTCAACTTCTCCAAGCTCCAGAGACTGACGACGCTTGATCTTGGTAACAATGGCTT CACAGGTAACCTGCCTTTGAGTCTTTTCTCGTGTACGTCGTTGATTGCGCTTCGTTTCGCAAGTAATCAGTTATCGGGACAAGTGTCAGCCAGGATTCAG GCCTTGCAGTCTCTTGCTTTCCTTTCTGTATCCAACAACCAGTTCAGTAATTTCACTGGCGCGTTGCAAATATTCACCGGTTGTAAGAATCTGTCTACTT TGATACTGTCCAAGAACTTCTACTATGAAGCCATGCCACAGGAGATTGAGAAAAATTTACGAATAGACACAACTGGTTTCCAGAACATCAGGATTTTAGC CTTGGGGGGTTGTAAGTTGACCGGTCAGATACCGGCTTGGCTAGCTAGCATCAAGACCTTGGGAGTGATTGATTTGTCCTTCAACCAATTCAACGGCTCG ATTCCTGGTTGGTTCGGGAGTCTACCGAGTCTCTTCTACATGGACTTGTCGAATAATCGACTCTCGGGCGATCTCCCCGTGGAGATCACTGATCTAGAAG CACTTGTATCGCCTCAACTCAATCATTCGGCCGACAAGACTCATTTGGAACTGCCCGTGTTTGTGAATCCGAATAACGTAACGATTACGAATCTGCAGTA TAACCAGCTTGCCAGCCTCCCACCGGCTATATACTTGGGTAACAACAGCCTCAGTGGGAGCATTCCTGAAGAGATTGGACATCTCAAGGGCCTTCATGTT CTCGATCTTAGCTCGAACAACTTCTCAATGAATATCCCGGACGAGATATCCAATCTCACTAATCTAGAAAACTTGGATCTCTCCGGGAATCAGCTCTCCG GACAGATCCCTGTAGGTTTAAAAGGCCTGCATTTCTTGTCATCGTTCAATGTCGCGGGGAACAATTTGCAGGGTTCGATCCCTGCTGGCGGTCAGTTTGA TACGTTCCCTAGCTCGAGCTTTGCAGGGAATCCGGGATTGTGTGGGGCGGTTTTGCAGCGGTCTTGCCCCGGTTCGCCAGATGACAATGCTCGTCCGGGT TATTCTCGCAGAAAGAAAGCGAAGAGTATGAATGCGAAAGTTGTTGTTGGACTTGTTCTTGGAATCTGTTTCGGAACAGGCTTGTTGATTGCTGTGATGG CACTGTGGATACTCTCCAAGAGAAGGATCATTCCTGGAGGAGATACCGACAAGATCGAAATGGACGGATACTCCAGCAACTCATATCCGAGAATCAGTCC GGATGGCGATAGAGATACCAGCCTAGTCATGTTGTTTCCGAACAATATAGTCAATGAGGTCAAAGATCTGACTATTATCGAGCTCTTGAAGGCGACCGAC AACTTCAGCCAAGCGAATATTGTTGGATGTGGAGGGTTCGGACTTGTTTACAAGGCAACATTAGCAAACGGGACGAAGCTAGCTGTGAAGAAACTCTCAG GAGATTTCGGATTAATGGAGAGAGAGTTCAAAGCCGAGATCGAAGCACTCTCGACAGCTCAGCACGAGAATCTCGTCTCATTGCAAGGATACTGCGTCCA CAACGGATTCCGCCTCCTGATCTATTCCTACATGGAGAACGGGAGCCTCGATTACTGGCTACACGAAAAAACCGAAGGCGCTTCCCAGCTCGACTGGCCG ACTCGACTCAAAATCGCGAAAGGTGCGAGTATCGGATTAGCTTACATGCACCAAGTATGCGAGCCGCACATTGTCCATCGCGATATAAAGTCGAGCAACA TCCTCCTCGACGAGAAATTCGAAGCTCACGTGGCCGATTTCGGCCTAGCGAGGTTGATTCGTCCTTACTGCACGCACGTAACTACAGAGCTCGTCGGTAC GTTGGGGTATATTCCACCCGAATACGGTCAAGCGTGGATAGCCACCTTGAGAGGTGACGTGTACAGCTTTGGAGTGGTGATGCTCGAGTTGCTGAGCGGG AAGAGACCCGTGGAAGTGTTCAAGCCGAAGATGTCGAGGGAGCTTGTCGCGTGGGTTTACCAGATGAGGAGCGAAGGGAAGCAGGAACAGATATTCGACC CGGTCCTTCGAGACAAAGGGTACGAGGAGGAGATGCTAAAAATGCTGGATGTTGCGTGTATGTGCGTTAGCCATAACCCGAGGAAGAGACCCGGGATACA AGAGGTTGTAGACTGTCTGAAGAAGTTAGGAGGATTTCCCCAGAAAGAAGAAGGATTGATTGAATGA
AA sequence Show only first row Show all	>Lus10016395 pacid=23161867 polypeptide=Lus10016395 locus=Lus10016395.g ID=Lus10016395.BGIv1.0 annot-version=v1.0 MPPLHKLSSFFIGVFWVTIITVQFLQSRAQIPVCNSVDRSSLLSFFSNISSTSPPPLNWSSQSPSNSDCCRWEGIRCHPITGRITHLELPFRNLFGTLSL PSNSNLSTLSHLNLSNNRLYGNIPPGFFSSLPNLEVLDLSFNRLTGQLPFPDDGDRSSSQIKIADFSSNLFHGEISLPDKLAWNNLTSFNVSNNSFVGSI PSGLCRTTTSFLAELDFSFNDFSGGIPYGLGNCSQLKILKGGFNNLSGLIPDDIYMINSLEELSLSVNHLTGNISNQLVNLVNLKSLELFSNQLNGSILI DIGKLSKLENLQLHVNNLTGPLPPSLSNCTNLVTLILRVNLLTGRIDEFNFSKLQRLTTLDLGNNGFTGNLPLSLFSCTSLIALRFASNQLSGQVSARIQ ALQSLAFLSVSNNQFSNFTGALQIFTGCKNLSTLILSKNFYYEAMPQEIEKNLRIDTTGFQNIRILALGGCKLTGQIPAWLASIKTLGVIDLSFNQFNGS IPGWFGSLPSLFYMDLSNNRLSGDLPVEITDLEALVSPQLNHSADKTHLELPVFVNPNNVTITNLQYNQLASLPPAIYLGNNSLSGSIPEEIGHLKGLHV LDLSSNNFSMNIPDEISNLTNLENLDLSGNQLSGQIPVGLKGLHFLSSFNVAGNNLQGSIPAGGQFDTFPSSSFAGNPGLCGAVLQRSCPGSPDDNARPG YSRRKKAKSMNAKVVVGLVLGICFGTGLLIAVMALWILSKRRIIPGGDTDKIEMDGYSSNSYPRISPDGDRDTSLVMLFPNNIVNEVKDLTIIELLKATD NFSQANIVGCGGFGLVYKATLANGTKLAVKKLSGDFGLMEREFKAEIEALSTAQHENLVSLQGYCVHNGFRLLIYSYMENGSLDYWLHEKTEGASQLDWP TRLKIAKGASIGLAYMHQVCEPHIVHRDIKSSNILLDEKFEAHVADFGLARLIRPYCTHVTTELVGTLGYIPPEYGQAWIATLRGDVYSFGVVMLELLSG KRPVEVFKPKMSRELVAWVYQMRSEGKQEQIFDPVLRDKGYEEEMLKMLDVACMCVSHNPRKRPGIQEVVDCLKKLGGFPQKEEGLIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72300			Leucine-rich receptor-like pro...		Lus10016395 [exp]	0	1
AT1G79180	MYB	ATMYB63	myb domain protein 63 (.1)		Lus10031181 [exp]	2.6	0.9227
AT1G48780			unknown protein		Lus10009004 [exp]	3.2	0.9027
AT2G26800			Aldolase superfamily protein (...		Lus10026823 [exp]	10.1	0.8965
AT5G14540			Protein of unknown function (D...		Lus10014549 [exp]	10.7	0.8417
AT1G79180	MYB	ATMYB63	myb domain protein 63 (.1)		Lus10031758 [exp]	13.6	0.8917
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10004831 [exp]	16.4	0.8752
AT5G10840			Endomembrane protein 70 protei...		Lus10000222 [exp]	16.4	0.8604
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10006640 [exp]	18.2	0.8744
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10039404 [exp]	21.0	0.8665
AT5G12300			Calcium-dependent lipid-bindin...		Lus10009692 [exp]	22.3	0.8795

Compare expression of checked genes

Lus10016395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.