Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02645 107 / 2e-24 Plant protein of unknown function (DUF247) (.1) AT3G50120 77 / 1e-14 Plant protein of unknown function (DUF247) (.1) AT3G50130 76 / 3e-14 Plant protein of unknown function (DUF247) (.1) AT3G50170 74 / 9e-14 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50140 71 / 1e-12 Plant protein of unknown function (DUF247) (.1) AT3G50180 71 / 2e-12 Plant protein of unknown function (DUF247) (.1) AT3G47250 70 / 2e-12 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT4G31980 69 / 8e-12 unknown protein AT3G50150 65 / 1e-10 Plant protein of unknown function (DUF247) (.1) AT5G22550 64 / 2e-10 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019721 [exp] 1087 / 0 AT3G02645 111 / 1e-25 Plant protein of unknown function (DUF247) (.1) Lus10022538 [exp] 183 / 4e-50 AT3G02645 86 / 2e-17 Plant protein of unknown function (DUF247) (.1) Lus10009504 [exp] 161 / 1e-42 AT3G02645 196 / 3e-56 Plant protein of unknown function (DUF247) (.1) Lus10026964 [exp] 154 / 4e-40 AT3G02645 118 / 3e-28 Plant protein of unknown function (DUF247) (.1) Lus10031159 [exp] 154 / 6e-40 AT3G02645 175 / 2e-48 Plant protein of unknown function (DUF247) (.1) Lus10023185 [exp] 108 / 1e-24 AT3G02645 378 / 1e-125 Plant protein of unknown function (DUF247) (.1) Lus10015084 [exp] 105 / 2e-23 AT3G02645 382 / 4e-127 Plant protein of unknown function (DUF247) (.1) Lus10033668 [exp] 95 / 4e-20 AT3G02645 165 / 8e-45 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 76 / 3e-14 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G085300 [exp] 142 / 1e-35 AT3G02645 519 / 2e-180 Plant protein of unknown function (DUF247) (.1) Potri.017G062900 [exp] 132 / 2e-32 AT3G02645 427 / 8e-145 Plant protein of unknown function (DUF247) (.1) Potri.001G337900 [exp] 131 / 4e-32 AT3G02645 465 / 2e-159 Plant protein of unknown function (DUF247) (.1) Potri.001G337800 [exp] 130 / 9e-32 AT3G02645 449 / 4e-153 Plant protein of unknown function (DUF247) (.1) Potri.003G024100 [exp] 130 / 1e-31 AT3G02645 441 / 8e-150 Plant protein of unknown function (DUF247) (.1) Potri.017G124100 [exp] 129 / 1e-31 AT3G02645 474 / 7e-163 Plant protein of unknown function (DUF247) (.1) Potri.001G205100 [exp] 125 / 4e-30 AT3G02645 458 / 7e-157 Plant protein of unknown function (DUF247) (.1) Potri.003G205900 [exp] 110 / 2e-25 AT3G02645 332 / 2e-107 Plant protein of unknown function (DUF247) (.1) Potri.007G132300 [exp] 79 / 3e-15 AT2G28580 221 / 1e-65 Plant protein of unknown function (DUF247) (.1) Potri.017G019400 [exp] 73 / 3e-13 AT2G44930 240 / 1e-73 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10016396 pacid=23161916 polypeptide=Lus10016396 locus=Lus10016396.g ID=Lus10016396.BGIv1.0 annot-version=v1.0 ATGGCTGCCACCACATCCTCTCCTCCTCCGCCCTCAATCCTCAACTCAGACTTCACCGACGAGAAATGGCGGCTACAGATCAGAGACAACGTCAAGCTCG ACTTAGAAACCATCATCCAGAGCCTCCTCTGCGTTTTCCACGTCCCCGACTCTCTCAAAGCCACCAAACCCGAAGCCTACTCCCCACAGCTCTTTGCTTT AGGCCCTTTCCACCATTTCAGTCCAGAGCTTTACCAGATCGAGCCGCTAAAGCTCGCCATCTCCAAACGAGCTCTTGAGAGGTTCAACCTCACCGGATTC GACGACTTCATTGCTCTGCTTTCCCCTGCTCTGCCTCGCATCCAGGCCTACTACGGCCGACACCTGGACCTCAACGACGAAACCCTAGCTTGGATCATCG CCATCGACGGACTCTTCTTCGTCGAGATTCTCTATAACGAGGAGATGCTGCTCTCTTCCTCCGTTCCTTACTTCTTCGATTCGTCCAAGCGGAAGCTCTC CCCTCACGCGATCCTCAACGATTTTGTGCTTTTGGAGAATCAGATTCCTCTGTTCTTGCTGGCGGAGATTCTCTCCAACGATCGAGCGATTTCGGAACAG TTCGCATCGAAATTGGACTCGATCTGTAGATTTCTATCTCCATTGAAGCTTCCCGATGAGTTCCCTCCGTACGTCAGACGGCGGCATCTGCTTGATCGGC TCTACCTCCTCATTATCTGGAGAGAGCAGATCGAGACGAAGCCAATCGTGATCGAGGCTGACGGTGAGCTCCACGGGCAGGTCAACCGTAGCATCGACGT TCGAGCTCCGACTTCGGTCGGGATTCTGCAGAACATCGCCGCCGGGATGTTGAAGAAAATTGAAGATGCGCAGATTGATGCTGAAGCTGCAGGGGGGTCT GAAAATGTGAGCGTGGTCATTGAGACAGTGAACTTCCAAGATCCGGAACTATCTGGATCGACGGCGGTTGCGAAGAGGAGGATTCAGAGGATGACGAAAG CGGCAACGTTTCGGAGAAAGGACATGGAGAGCATAGTGGCTACGGTGGAGAAAGAAGGAGAGGATGGAGTTGGATTTGTCTTTGCTGATGCGGCGAAAGT GAGGATGGAACATAGAATGACGGAGGCGGCTGGTGGAGGCGGTGGGGGGAATGATCGGAGCGACGGTGGCGGTGGCGGGAGCGACAATTTTGCAGTGAAG TTTCTGAGGAAAGTGGCGTCGGTTGAAATTGGGCCGGACGAAAATGTTACTCGCGGAGTAGAGGCATTTGCTGAAGGACAAGGGAAACTACCAATAACAG GAATATTCCACGTGTTCACAATGCTAAACAAAGTCCTAGAAGAAGACCGGTGCCTAGTCCCATCAGCCACCTACCTTAAAAAAGTCAACGTCAAAATCTC CCGCACACCCAACGGCGGCGGACTCAGCGCCATCCACTTCGACAGCCGGTCCAAAACCCTCTACCTCCCGACATTCACCTGGTCCCCCAACGCCGAGGTG GTCCTCCGAAACCTCGTAGCCTACGAGGCCACCGCCAAATCCAACTCCCTCATCCTCACCCGCTACACCGAGCTCATGCACGGCCTCGTCCGCACTTCCG ACGACGTCCGCCTCCTACAGGTCGCCGCCGGTCTTGGTACATCGCTGGCGGATGGGCCTCTCATGCGGGCTCAGATGTTTGGAGGAATGGGGCTGAACAC GAGCTTCCCGAAGGACTGGACGATACTGGATCCGAGCGTGGCAGGGATCAACGAGTACTACAACAATAAGGTGACCATATTGGTGTCGAGGCTTTTTAAA AAGTACGCCAAGGTGACGATCAAGGTACTGGTGTTGGTCGCCGGGGTGATATTGGTGATGGTGATTTTTATACAGGCGTTTTGTAGTGTTTATCGGTGTA ATAATGGGAGTGGGTTGCATCGAGTTCTTGGTGATGGTGGTGGTGGTGTTTTGGGTTCTGTGTTTTTTGGTGATGCATGA
AA sequence Show only first row Show all	>Lus10016396 pacid=23161916 polypeptide=Lus10016396 locus=Lus10016396.g ID=Lus10016396.BGIv1.0 annot-version=v1.0 MAATTSSPPPPSILNSDFTDEKWRLQIRDNVKLDLETIIQSLLCVFHVPDSLKATKPEAYSPQLFALGPFHHFSPELYQIEPLKLAISKRALERFNLTGF DDFIALLSPALPRIQAYYGRHLDLNDETLAWIIAIDGLFFVEILYNEEMLLSSSVPYFFDSSKRKLSPHAILNDFVLLENQIPLFLLAEILSNDRAISEQ FASKLDSICRFLSPLKLPDEFPPYVRRRHLLDRLYLLIIWREQIETKPIVIEADGELHGQVNRSIDVRAPTSVGILQNIAAGMLKKIEDAQIDAEAAGGS ENVSVVIETVNFQDPELSGSTAVAKRRIQRMTKAATFRRKDMESIVATVEKEGEDGVGFVFADAAKVRMEHRMTEAAGGGGGGNDRSDGGGGGSDNFAVK FLRKVASVEIGPDENVTRGVEAFAEGQGKLPITGIFHVFTMLNKVLEEDRCLVPSATYLKKVNVKISRTPNGGGLSAIHFDSRSKTLYLPTFTWSPNAEV VLRNLVAYEATAKSNSLILTRYTELMHGLVRTSDDVRLLQVAAGLGTSLADGPLMRAQMFGGMGLNTSFPKDWTILDPSVAGINEYYNNKVTILVSRLFK KYAKVTIKVLVLVAGVILVMVIFIQAFCSVYRCNNGSGLHRVLGDGGGGVLGSVFFGDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02645			Plant protein of unknown funct...		Lus10016396 [exp]	0	1
					Lus10003030 [exp]	3.6	0.8424
AT5G58750			NAD(P)-binding Rossmann-fold s...		Lus10040675 [exp]	7.5	0.8685
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006611 [exp]	14.0	0.8550
AT2G36570			Leucine-rich repeat protein ki...		Lus10018255 [exp]	14.4	0.7999
AT3G29034			unknown protein		Lus10033010 [exp]	15.8	0.8630
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10019531 [exp]	16.2	0.8624
AT1G72230			Cupredoxin superfamily protein...		Lus10025580 [exp]	18.1	0.8647
					Lus10019691 [exp]	22.4	0.8266
AT5G14240			Thioredoxin superfamily protei...		Lus10014596 [exp]	25.7	0.8021
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10021395 [exp]	26.2	0.8436

Compare expression of checked genes

Lus10016396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.