Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63500 614 / 0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT1G14740 340 / 3e-102 Protein of unknown function (DUF1423) (.1) AT5G48160 275 / 3e-80 OBE2 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT3G07780 263 / 3e-76 OBE1 OBERON1, Protein of unknown function (DUF1423) (.1) AT5G57380 66 / 9e-11 VIN3 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) AT3G24440 51 / 6e-06 VRN5, VIL1 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019718 [exp] 1806 / 0 AT3G63500 665 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10013248 [exp] 289 / 2e-87 AT1G14740 466 / 7e-160 Protein of unknown function (DUF1423) (.1) Lus10030770 [exp] 264 / 1e-79 AT1G14740 394 / 7e-133 Protein of unknown function (DUF1423) (.1) Lus10012327 [exp] 270 / 3e-78 AT5G48160 878 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10006372 [exp] 268 / 7e-78 AT5G48160 871 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10030769 [exp] 91 / 4e-21 AT1G14740 136 / 5e-38 Protein of unknown function (DUF1423) (.1) Lus10028170 [exp] 54 / 6e-07 AT5G57380 239 / 8e-72 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10042869 [exp] 53 / 2e-06 AT5G57380 237 / 5e-71 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10019393 [exp] 50 / 1e-05 AT3G24440 381 / 6e-126 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G059000 [exp] 1146 / 0 AT3G63500 693 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.001G264100 [exp] 1142 / 0 AT3G63500 660 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.010G102600 [exp] 364 / 1e-109 AT1G14740 773 / 0.0 Protein of unknown function (DUF1423) (.1) Potri.008G138100 [exp] 358 / 7e-108 AT1G14740 729 / 0.0 Protein of unknown function (DUF1423) (.1) Potri.002G221500 [exp] 270 / 1e-78 AT5G48160 811 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.014G164800 [exp] 264 / 2e-76 AT5G48160 859 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.018G091500 [exp] 59 / 2e-08 AT4G30200 612 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.018G076500 [exp] 52 / 2e-06 AT3G24440 531 / 0.0 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Potri.006G167800 [exp] 51 / 4e-06 AT4G30200 627 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.006G158676 [exp] 49 / 2e-05 AT3G24440 523 / 9e-179 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF07227 [flax] [poplar] PHD_Oberon PHD - plant homeodomain finger protein
Representative CDS sequence Show only first row Show all	>Lus10016399 pacid=23161883 polypeptide=Lus10016399 locus=Lus10016399.g ID=Lus10016399.BGIv1.0 annot-version=v1.0 ATGAAGAGGCTGAGATCGAGTGATGATCTTGATTCCTACAGTGAGAAGAGCTCGTCCCTCAAAGATTCGGGCACAAATCGATCCAATTCGCGAAGCTTTT ACCACAAATCCGATGGTGTAAGGAAGGGTGGATTAGTGTCAGCTTCATCTCCCTCTAGCAGGTATGATCGGGATAGATCTATCGACGACGATTCTCGAGA CAGTCCGAGGTTTGTTCGCAAGCGAACTGATTACGATTTCGATAGCTTTGATAGAAGGAAAGGAATGGGATCTTCTTCTGGGTTTGATCGGTATGCAGGT AGTAGAGAAGGGTACAGTGGTGGAGGAGTTGGTGGCAATGGTGGTGGGATTAGTGCCGAGAGAGCTGTTCATCGATCCGAGAGTTTCTCAGGGTCGAGGA GGGAGTTCCCCAAAGGATTTAGGTCGGAGAGGGATCGGTCCAGAAGGGAAGGGAGTGTGTCTTCTTGGAGGAGGTTTGGCAGTGGGAGCAAGGATTTAGA GGAAGGGAGAGGGAGCAGAAGTGGGAATGAGGATAAAATGGCGGTAACTAGGATTTCTCCTAAAGGTTTGAAGGAGGTAAAGTCGCCGACTTGGTCGAGG GACTCGAGCAGTGAGCAGTCGAAAATGTTTAGGGGCAGTGATAGGGATGAAGGTAAGGGAAAGTCTTGGACTTCCAAGTCAAGGTCATCGCCATCTTGGT CGAAAGAGTCTGGTAGCGAGCAACAATCGAAGAGTGTGGAGGTCGGGAAGAGGAATGTTGATGTCGAGGTGAAAAGTGTTGAAATTGAAGCGACGAAAAG TATTGAAGGGGAAGCAACGAAAAGTATTGAAGTGGAAACACGTAGTGTTGAGGTGGAGACGAGAAGTGTTGAAATGGAGGTGAAGAGTGTCCAGAGTGGC AGCAGTAGTGAGATGGAGGAAGGCGAGCTCGAGCCGGAGCCTGACTCGAAGCAAGAGGTTGACAAAGATAATGAGAATGAAACCCTAAAAGGAGTGAAGA TTGACACTGAAGTGAACGAACTAGAGAACGAAGTCACGAAAACCGAGATAAAGGATATGGACAAGGCAGTTGAGCTGTCAAACTGTGAGAAAATCTTGAG TAAGGAACCTGGCATCGATGTTGATGGGATCAGAAATCGGGGTTATCAAGTGACTGAAGAGGTCAAGAACTCGGAGGAACTCGGTAGTGGTCAAGCTAAG GCGGTTGAGAAGGCGAAGGACACAGTTGACATGAATGGGCTCGAGAATAGGTTTGATCTAGAAGTTAAAGTTGACCAAGCTGATGTCAAGAAATCGAAAA ATGAAGTTGTGCAAGACAATGAAGAAGCTCGACTGAACTCGAATATTGTTACTCAGAATTTGACTCAGAACATGAAAGATAAAGGTAAGAGTGTGATTGT TTCACCCGCTCGTGTTGTTGCCGATGATGTTCTTTCATCCAGGGACAGAGAAGTTGATATGGAGGGACCAAGTACTCGGGGCTTCGAGCTTTTCGGTAGC TCCCCCGTGAGGAAAGTAGAGAAAGAGGAGCAATCTGGTGACAGACAGAAAGATGAAAGGCTAGTTTTAGAGCCACTTGATCTCTCTCTGAGCTTACCCA ATGTGTTGTTACCTATCGGTGCTACAAAAGATACAACTGAAGCCCCCCGGGGTGCTCAGAGTGATGCAAGAAGTCTTCAGTCTTTCAGCTCGTTCCGAAC AAACTCCGATGGATTCACTGCTTCCATGTCTTGCTCAGGCTCACAGTCGTTTTTCCACAACCCAAGCTGTTCGCTAACTCATAACTCATTGGATCTCGAC AATATCGAACAATCTGTTCACAGCCGCCCCCTATTCCAGGGGATTGATTGGCAGGCTCAGGCTCAGAATCAAAACGATTCAAATTCAAAGCACAAGGATA CTCCTTCCTTGTACCAGAAAATCTTGATGAATGGAAATGGATCACTTCATCAGGGCATGGCAAATGGTCAACCAGTTCATGGAAGCTCGAAAACATCGAA CGGTCTCGAAAGACAAATGAGTTTGCATAAGCAATCTTCTCCTTCGCAGAGCATTGGTTCTCAAGATATGGTTCTGAGTAGCTATAGCTTCGACAAGAAG CGAGCAGCGAGGGAGAAGCATAATAGCAGTAGCCTCTACAGGAGTAACAGTCAGAAAGAAGAACGATTTTCAATAGGTGGAGCCGATTTCGTCGAAACTG TAATCAGCAGAATAGTCTCTGATCCAATCCACGTCATGGCTCGAAAGTTTCACGAGATGACAGCACAGTCCGCATCTTGTTTGAAGGAGAGCATCCGAGA GATAATGCTGAATGCTGATCGGCAAGGCCAGTTGTGTGCTTTTCAAACTGCTCTCCATAACCGGTCCGATTTAACATTGGACACCATTCTAAAGTCTCAC AGGGCACAGCTCGAAATACTCGTGGCTCTGAAATCCGGACTGGTGGAATATCTTAAAGTGGACACCAGCGTCTCCTCCTCTGACCTGGCAGAGGTTTTCT TGAATTTGAAATGTCGAAATCTCGCTTGTCGGAGTCCTTTACCTGTAGACAACTGTGACTGCAAGGTTTGCACGAAAAAGACCGGTTTTTGCAGCACTTG TATGTGTCTGGTGTGCTCGAAATTCGACATGGCATCGAATACTTGTAGCTGGGTGGGTTGTGATGTCTGTCTTCATTGGTGTCACGCCGATTGCGCTTTA CGAGAAGCTTACATAAGAAATGGGAGGAGTCCGACCGATGTCAACCAAGGGAGTACAGAGATGCAGTTCCATTGTGTGGCTTGTGATCATCCTTCTGAGA TGTTTGGTTTCGTTAAGGAAGTGTTTCAGAACTTTGCCAAAGAATGGACGGCTGAGACGTTGTGCAAAGAGCTCGAGTATGTAAAGAGGATTTTCGGGGG CAGTAAAGATGCAAGGGGGAGGCGGCTTCATGAGATTGCGGATCAGATGCTCGCGAAAATGGCTAATAAGTCGAATTTTCGACAGGTTTATAGTCACATC ATGGGGTTCCTCACTGACAGTGATTCTTCGAAGTTCGCAAATGCTACTGCTGCTTACAGCGGCAAGGAACAATTGAAAGGCGGTATTTCTAGCAGCGTAC CGGGCCCTAGTCAGGACGGAAATTGGCGGAAGTTAGTCAGTTCCGAGAAGGGACCTAAACTGGAGAGATCATCCAGTTTGCTTCCTACATTTCCACCCGA TCTGAACGACAAACGTCCAGTTGATACCGAGTTGCTCCCAAGAAGCAGCAGCCTGAAAGAACCGGTTTTCGACGAACTCGAGGGCATCGTGAGGATCAAA CAAGCAGAGGCCCAAATGTTCCAAACTCGTGCAGACGACGCGAGAAGAGACGCTGAAGGGCTGAAACGAATCGCGATTGCCAAGAGCGAAAAGATCGAAG AGGAGTATGCAAGCAGGATAGCCAAGCTGCGGTTATCAGAGTCCGAAGAGCTTCGGAAACAGAAGCTGCAAGAGTTCCAGGCGCTGGAGAGAGCTCACCG GGAGTACTACGGAATGAAGATGAGGATGGAAGCGGATATCAAGGATCTGTTGCTGAAAATGGAAGCGACGAAACGGAATCTCACCATTTGA
AA sequence Show only first row Show all	>Lus10016399 pacid=23161883 polypeptide=Lus10016399 locus=Lus10016399.g ID=Lus10016399.BGIv1.0 annot-version=v1.0 MKRLRSSDDLDSYSEKSSSLKDSGTNRSNSRSFYHKSDGVRKGGLVSASSPSSRYDRDRSIDDDSRDSPRFVRKRTDYDFDSFDRRKGMGSSSGFDRYAG SREGYSGGGVGGNGGGISAERAVHRSESFSGSRREFPKGFRSERDRSRREGSVSSWRRFGSGSKDLEEGRGSRSGNEDKMAVTRISPKGLKEVKSPTWSR DSSSEQSKMFRGSDRDEGKGKSWTSKSRSSPSWSKESGSEQQSKSVEVGKRNVDVEVKSVEIEATKSIEGEATKSIEVETRSVEVETRSVEMEVKSVQSG SSSEMEEGELEPEPDSKQEVDKDNENETLKGVKIDTEVNELENEVTKTEIKDMDKAVELSNCEKILSKEPGIDVDGIRNRGYQVTEEVKNSEELGSGQAK AVEKAKDTVDMNGLENRFDLEVKVDQADVKKSKNEVVQDNEEARLNSNIVTQNLTQNMKDKGKSVIVSPARVVADDVLSSRDREVDMEGPSTRGFELFGS SPVRKVEKEEQSGDRQKDERLVLEPLDLSLSLPNVLLPIGATKDTTEAPRGAQSDARSLQSFSSFRTNSDGFTASMSCSGSQSFFHNPSCSLTHNSLDLD NIEQSVHSRPLFQGIDWQAQAQNQNDSNSKHKDTPSLYQKILMNGNGSLHQGMANGQPVHGSSKTSNGLERQMSLHKQSSPSQSIGSQDMVLSSYSFDKK RAAREKHNSSSLYRSNSQKEERFSIGGADFVETVISRIVSDPIHVMARKFHEMTAQSASCLKESIREIMLNADRQGQLCAFQTALHNRSDLTLDTILKSH RAQLEILVALKSGLVEYLKVDTSVSSSDLAEVFLNLKCRNLACRSPLPVDNCDCKVCTKKTGFCSTCMCLVCSKFDMASNTCSWVGCDVCLHWCHADCAL REAYIRNGRSPTDVNQGSTEMQFHCVACDHPSEMFGFVKEVFQNFAKEWTAETLCKELEYVKRIFGGSKDARGRRLHEIADQMLAKMANKSNFRQVYSHI MGFLTDSDSSKFANATAAYSGKEQLKGGISSSVPGPSQDGNWRKLVSSEKGPKLERSSSLLPTFPPDLNDKRPVDTELLPRSSSLKEPVFDELEGIVRIK QAEAQMFQTRADDARRDAEGLKRIAIAKSEKIEEEYASRIAKLRLSESEELRKQKLQEFQALERAHREYYGMKMRMEADIKDLLLKMEATKRNLTI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63500			Protein of unknown function (D...		Lus10016399 [exp]	0	1
AT1G72740	MYB		Homeodomain-like/winged-helix ...		Lus10030935 [exp]	4.6	0.8709
AT3G27260		GTE8	global transcription factor gr...		Lus10014609 [exp]	5.3	0.8626
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10023404 [exp]	5.3	0.8471
AT4G08350		GTA2, GTA02	global transcription factor gr...		Lus10028630 [exp]	5.9	0.8654
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10008294 [exp]	11.4	0.8711
AT1G78420			RING/U-box superfamily protein...		Lus10005577 [exp]	13.3	0.8666
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	13.4	0.8731
AT2G32710		ICK7, ACK2, KRP...	KIP-RELATED PROTEIN 4, INTERAC...		Lus10043139 [exp]	15.6	0.8023
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Lus10009064 [exp]	27.2	0.8439
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10038670 [exp]	30.4	0.8166

Compare expression of checked genes

Lus10016399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.