Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21080 511 / 9e-165 Uncharacterized protein (.1) AT2G41830 447 / 9e-141 Uncharacterized protein (.1) AT1G05960 298 / 4e-86 ARM repeat superfamily protein (.1.2) AT5G26850 268 / 2e-75 Uncharacterized protein (.1.2.3.4) AT3G28345 66 / 2e-10 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT2G36910 64 / 5e-10 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT1G02530 63 / 8e-10 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT1G02520 62 / 3e-09 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT3G28380 62 / 3e-09 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT1G10680 61 / 3e-09 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019717 [exp] 1670 / 0 AT2G41830 1012 / 0.0 Uncharacterized protein (.1) Lus10026298 [exp] 466 / 3e-148 AT2G41830 1083 / 0.0 Uncharacterized protein (.1) Lus10042372 [exp] 367 / 8e-110 AT2G41830 840 / 0.0 Uncharacterized protein (.1) Lus10001161 [exp] 293 / 6e-84 AT1G05960 999 / 0.0 ARM repeat superfamily protein (.1.2) Lus10006583 [exp] 287 / 7e-82 AT1G05960 960 / 0.0 ARM repeat superfamily protein (.1.2) Lus10029842 [exp] 239 / 2e-65 AT5G26850 1115 / 0.0 Uncharacterized protein (.1.2.3.4) Lus10020697 [exp] 228 / 8e-62 AT5G26850 1103 / 0.0 Uncharacterized protein (.1.2.3.4) Lus10043069 [exp] 78 / 4e-14 AT3G28390 1232 / 0.0 ATP-binding cassette B18, P-glycoprotein 18 (.1) Lus10036617 [exp] 77 / 7e-14 AT3G28345 764 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G052100 [exp] 548 / 3e-179 AT2G41830 1110 / 0.0 Uncharacterized protein (.1) Potri.016G055100 [exp] 544 / 1e-177 AT2G41830 1184 / 0.0 Uncharacterized protein (.1) Potri.007G128000 [exp] 342 / 7e-102 AT1G05960 1014 / 0.0 ARM repeat superfamily protein (.1.2) Potri.013G008500 [exp] 252 / 5e-70 AT5G26850 1132 / 0.0 Uncharacterized protein (.1.2.3.4) Potri.001G417600 [exp] 70 / 7e-12 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.011G133800 [exp] 68 / 2e-11 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G085000 [exp] 64 / 6e-10 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.016G093600 [exp] 64 / 6e-10 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.001G139700 [exp] 63 / 1e-09 AT4G25960 1875 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.006G123900 [exp] 63 / 1e-09 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016400 pacid=23161846 polypeptide=Lus10016400 locus=Lus10016400.g ID=Lus10016400.BGIv1.0 annot-version=v1.0 ATGCTCATGATTTCATCAGCTACCGTACCAGATGGACTTGATACTCAGGTTGGTCAATTTGGGTTCCAAATGTCTGGCGGGCAAAAGCATAGAATCGCCA TAGCAAGAGAGAACCTAAAATCCTGCTTCTTGATGAAGCAACTAGTGAGTGCTGTTGACACACAATCTGCAAGAACGGTGCAAGCTGCTGATCAAGCAAG CATCCGAAGGAAGAACCATCTCGTAGTTGATATTTTTCACATTCGCCCAGTCCAGAACCATCAGTGCACATTGATTGATAAGGTTGAAATGCTCATCCCC TTGAGCTACCCAGTGGCACTTTTTCTTCTTCTTCATTACACAATAGTGCTGAGGAATTTCCCACAAGATAATATGAGGAGAAGAATCGAGAGATGGTGGT GCCGGGGGGAAGAAAAGATGGGTGCGGTTGCGAGGACTATATTTCCTGTGTGTGAAAGCTTGTGTTTCTTCTGTCCTTCGTTGCGTACGAGGTCCAGGCA TCCTCTTAAGCGCTACAAGAATTTGCTTGCTGATATTTTCCCCCGTTCCCCGGTTAGTACGGATGAACAACCAAATGATAGAAAGATTGGTAAACTATGT GAATATGCTTCCAAAAACCCTCTCCGTATCCCAAAGATCACCACTTCTTTGGAGCAAAGATGTTACAAGGATCTAAGAACCGAACAGTTCCACTCTGTAA AAGTTGTATTATGCATCTACAGGAAGTTATTAGTCTCTTGTAGAGAGCAACTGCCATTGTTCGCAAGTAGCTTACTCGGTATCGTGCACATCCTATTGGA TCAAACTCGTCATAATGAGATACGGACTTTAGGATGCCAAGCTCTATTTGACTTTGTAAATAATCAGATAGATGGTACATATGTCTTCAATTTAGACAGT TTAGTTCCGAAACTGTGTGCTTTAGTACAGGAGATGGGTGAAGATGAGAAGATACAGACTCTTCGGTCTGCTGGTCTTCAATCTCTTTCAGCAATGGTGT GGTTCATGGGTGAATTCTCACATATTTCTGCAGATTTTGACAATGTTGTTTCAGTTGTCTTGGAAAATTACGAAGCACAAAAAGATTCAAATAATGAAAC AGCAAACACAAATGTTGAAGAAGGACATAATACACACTTTGTGTTGGCTATCTTAATCAAGCACCTTGATCATAAGAATGTTCTGAAGAAGCCTGACATG CAGCTTGACATTGTTCATGTCGCCACTTCTCTTGCTGAAGTGACTAAGGCTGATCAATCTCTGGCCATTGTTGGTGCATTGAGTGATATGATGAGACACC TAAGAAAAAGCATACACTGCTCTCTGGATGATTCTGATCTAGGGTCTGAAGTAATTGAGTGGAACCGTAAATTTCGTGAGGCGGTGGATGAGTGCCTCAT ACAATTGTCACTCAAGGGATTTCCGGAGGCATTATTTTTCCAGTTACTTCGAGTTATGGTATGTGATGACCATGTCACAAGGGTGGGCGCACATCGTGTA TTCTCGGTGGGTCTTGTCCCGTCTTCTGTTTGTCCCCGTACAGACAATGGTTCCCTCGTCGCTAATAAGTCTGCCGATGTCCAAAGAATGCTTTCAAGAA CAGTGTCAGTGTTTTCTTCCTCGGCTGCACTCTTTGAAAAGATGAAACGGGAACCACAACAAAACACCAACGCTAGTGATGCTATGAAAATTAGTCAGTC TACAATGGCTAGGATGAGGTCTGCGTATAGTCGAGCTTATAGCATAAAAGATATAACACCGCCTTTGCCAGCTGATGTGAGTACCATGACTGTTGAAGAG AAAGAACAGATAGTATCCCTTAGGTTGAGTAGTCGGCAGATAGGACTTCTGCTATCATCACTTTGGGCACAGTCCCTCTCACCACTCAATATACCTTCAA ATTATGAAGCGATTGCTCATAGTTATAGCCTGACATTGCTATTTGCAAGAACCAAGAATTCTTCAAATGAGACTTTGATCCGGAGCTTTCAGCTTGCGTT CTCTCTAAGGACCTTTGCACTTGCAGGCGAAGGAGGGCGACTAAAGCCATCCCGTCGCAGATCTCTGTTTACCTTAGCATCATCTATGATCTTATTTACG TCCAAAGCTTACAACATCCCGCCTCTTGTTTCGAGTGCCAAAGCTGCAATGACAGATAAAACGGTCGATCCATTTCTTCATTTGGTTGGTGGGAGCAAGT TACAAGCTGGTAACATGGATATCAGCCAGCCAAATAAAGCTTATGGATCCAAGGAGGATGACGAGCATGCAAAGAAGTCACTTTCAGGGATAGAAACAAC ACAGAGCCAATCTAAAGAAGCATTAGCAACAATGATGTTGAAGTTTCTGAGACTACCATCAAATCTTCTTGCGCAGGAAGAGGCATCCATGCTAGAACAA TTGCTCGGTGATTTCATACCTCACGATTCATGTCCTCTGGGAGCCGAATTGTTCATGGATGTGGCAGAGAAGAAGTCAGTACCAAAAGCAAAGGAAGTCG AACCTTCTGACAAGGATGCACCTTCATTGTTTACGATTGACGACAACGCTCCATCAACAACTGAAGGACAGACGGAAGCGGATAAGCAGCATCACGCTGC AACTCCAAGTCTCATTAGCGTTGGTGACCTTCTAACTGCAGTGTCTGAAACAACACAACAAGTTGGAAGATCTTCAGTCTCGACGCCTCCCCATATTCCT TACATGGAAATGGCTGGCCATTGTGAAGCCCTTTCAGCCGGAAAGCAGCAAATGATGTCTGCTGTATTGTCTGTTCAGCAGAGACAAGAAAGTTCGGTTA GAATGATGTCCGCCATCGAACCAAAAAAGCCGAAGAAGAACCCGTTCGATCTTCCTGTTGAACAGGGCGGAAACCCATTCCTGGACGAAAACTTCTTTGC AAACCTTCCGAATGCAAACGGGACAATGCAGTGCGGAGCGGAGTACCAGCAGCACCAGTATTTCCAGTTACCAGCTTCTAGTCCGTACGACAACTTTCTG AAGGCTGCTGGCTGTTGA
AA sequence Show only first row Show all	>Lus10016400 pacid=23161846 polypeptide=Lus10016400 locus=Lus10016400.g ID=Lus10016400.BGIv1.0 annot-version=v1.0 MLMISSATVPDGLDTQVGQFGFQMSGGQKHRIAIARENLKSCFLMKQLVSAVDTQSARTVQAADQASIRRKNHLVVDIFHIRPVQNHQCTLIDKVEMLIP LSYPVALFLLLHYTIVLRNFPQDNMRRRIERWWCRGEEKMGAVARTIFPVCESLCFFCPSLRTRSRHPLKRYKNLLADIFPRSPVSTDEQPNDRKIGKLC EYASKNPLRIPKITTSLEQRCYKDLRTEQFHSVKVVLCIYRKLLVSCREQLPLFASSLLGIVHILLDQTRHNEIRTLGCQALFDFVNNQIDGTYVFNLDS LVPKLCALVQEMGEDEKIQTLRSAGLQSLSAMVWFMGEFSHISADFDNVVSVVLENYEAQKDSNNETANTNVEEGHNTHFVLAILIKHLDHKNVLKKPDM QLDIVHVATSLAEVTKADQSLAIVGALSDMMRHLRKSIHCSLDDSDLGSEVIEWNRKFREAVDECLIQLSLKGFPEALFFQLLRVMVCDDHVTRVGAHRV FSVGLVPSSVCPRTDNGSLVANKSADVQRMLSRTVSVFSSSAALFEKMKREPQQNTNASDAMKISQSTMARMRSAYSRAYSIKDITPPLPADVSTMTVEE KEQIVSLRLSSRQIGLLLSSLWAQSLSPLNIPSNYEAIAHSYSLTLLFARTKNSSNETLIRSFQLAFSLRTFALAGEGGRLKPSRRRSLFTLASSMILFT SKAYNIPPLVSSAKAAMTDKTVDPFLHLVGGSKLQAGNMDISQPNKAYGSKEDDEHAKKSLSGIETTQSQSKEALATMMLKFLRLPSNLLAQEEASMLEQ LLGDFIPHDSCPLGAELFMDVAEKKSVPKAKEVEPSDKDAPSLFTIDDNAPSTTEGQTEADKQHHAATPSLISVGDLLTAVSETTQQVGRSSVSTPPHIP YMEMAGHCEALSAGKQQMMSAVLSVQQRQESSVRMMSAIEPKKPKKNPFDLPVEQGGNPFLDENFFANLPNANGTMQCGAEYQQHQYFQLPASSPYDNFL KAAGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21080			Uncharacterized protein (.1)		Lus10016400 [exp]	0	1
AT1G27070			5'-AMP-activated protein kinas...		Lus10030802 [exp]	7.1	0.7413
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10012908 [exp]	7.6	0.8241
AT2G39090		APC7, AtAPC7	anaphase-promoting complex 7, ...		Lus10034164 [exp]	11.6	0.8017
AT1G33420			RING/FYVE/PHD zinc finger supe...		Lus10013775 [exp]	13.5	0.7609
AT1G70620			cyclin-related (.1.2.3)		Lus10000440 [exp]	13.6	0.7971
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10012885 [exp]	15.0	0.7709
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10021766 [exp]	15.0	0.7684
AT3G63240			DNAse I-like superfamily prote...		Lus10022074 [exp]	18.2	0.7314
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10030562 [exp]	20.8	0.7748
AT5G44740		POLH	Y-family DNA polymerase H (.1....		Lus10036237 [exp]	23.0	0.7254

Compare expression of checked genes

Lus10016400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.