Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23120 82 / 2e-17 AtRLP38 receptor like protein 38 (.1) AT1G71390 82 / 3e-17 AtRLP11 receptor like protein 11 (.1) AT4G13820 80 / 1e-16 Leucine-rich repeat (LRR) family protein (.1) AT3G05370 77 / 2e-15 AtRLP31 receptor like protein 31 (.1) AT4G13920 76 / 6e-15 AtRLP50 receptor like protein 50 (.1) AT3G11080 75 / 7e-15 AtRLP35 receptor like protein 35 (.1) AT1G71400 75 / 8e-15 AtRLP12 receptor like protein 12 (.1) AT3G28890 74 / 2e-14 AtRLP43 receptor like protein 43 (.1.2) AT3G05360 73 / 4e-14 AtRLP30 receptor like protein 30 (.1) AT4G13880 72 / 7e-14 AtRLP48 receptor like protein 48 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019692 [exp] 191 / 3e-61 AT3G05370 82 / 8e-19 receptor like protein 31 (.1) Lus10006824 [exp] 161 / 3e-45 AT3G23110 185 / 2e-50 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10042239 [exp] 159 / 1e-43 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10004310 [exp] 158 / 2e-43 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10026415 [exp] 156 / 1e-42 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10009330 [exp] 142 / 7e-38 AT1G71400 245 / 2e-69 receptor like protein 12 (.1) Lus10003389 [exp] 137 / 4e-36 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10004313 [exp] 137 / 4e-36 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10006825 [exp] 135 / 2e-35 AT1G47890 377 / 6e-114 receptor like protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120466 [exp] 134 / 2e-38 AT1G47890 73 / 4e-15 receptor like protein 7 (.1) Potri.016G120600 [exp] 125 / 7e-32 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.001G128400 [exp] 91 / 5e-20 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.012G010101 [exp] 86 / 2e-18 AT1G45616 379 / 6e-115 receptor like protein 6 (.1) Potri.016G126900 [exp] 84 / 1e-17 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.016G127101 [exp] 82 / 5e-17 AT1G47890 580 / 0.0 receptor like protein 7 (.1) Potri.016G127000 [exp] 81 / 1e-16 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.011G055000 [exp] 80 / 1e-16 AT1G45616 456 / 3e-145 receptor like protein 6 (.1) Potri.001G400500 [exp] 80 / 2e-16 AT1G45616 463 / 2e-148 receptor like protein 6 (.1) Potri.012G020600 [exp] 79 / 3e-16 AT3G05660 372 / 2e-115 receptor like protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10016401 pacid=23161819 polypeptide=Lus10016401 locus=Lus10016401.g ID=Lus10016401.BGIv1.0 annot-version=v1.0 ATGGCCGATTCATTGCAGAGTTTCATCGTCAGTGGCATGGGTATCAATTCGATCATTGAAGGTTTCATTGGCTACTTTAACACGTTCAGATCTCTGTTAG TCTTTGCCATCTCCCTCTTAAGTTTCCAACTTGCAGAAGTTCCTTCTCCACTTAGGGTAGAAAATGAACCCAACCCAAAACTCACGCATGTAGGGTTTAC TTTCCACTTGACTTCGTTGCTCACCCTTCAAATTCTCACTAATTCATATAACACATATCTACGGTACTCACCAACACCATATCAGATTAAAATTAGCCCT CCCAGTTCACTTTGCATAGCTGCCTCACAGTTGTCCCCAATGAAACCTTACTTATTCGCATGGTTGATATCGTTATTGGTACCTCTTCTTCCTATACTAA TGGGCAGCAGAAATGCAAGTTTGGTCTCTGGCCGATGGCTGGAAGACCAGCGATCCTTGCTGCTCCAGTTGAAACAGAGCCTCACTTTCAACCAATCATT ATCAGGAAAGCTGGCAGGGTGGAATGCAAGCGCTGACTGTTGCCAGTGGCCTGGTATAAGTTGTGATCCTGATGGCCTTGGTCACGTTATCGGCCTCAAC TTGAACGATGAATACATCACCGGAGGAGGAGGCCTAGACAACTCCACGGCCCTCTACAGTCTTCAGCATCTTGAGGACCTGGATTTGTCTGGCAACAACT TCCAGACCAATGTTCCCGCTGCACTTGCCAACCTCACCAATTTGAGATATCTGGACTTATCTTATGCTGGCTTCTTTGGGCAAATTCCTGCTACCATCTC TCAGTTGAAGCTCCAGTCTCTAACGGTAGATGGTGTTGAAAAATATTATATTTTCCTTATTAGTATAGGAATAAGTTTCAATATTTTTCCTTATTAG
AA sequence Show only first row Show all	>Lus10016401 pacid=23161819 polypeptide=Lus10016401 locus=Lus10016401.g ID=Lus10016401.BGIv1.0 annot-version=v1.0 MADSLQSFIVSGMGINSIIEGFIGYFNTFRSLLVFAISLLSFQLAEVPSPLRVENEPNPKLTHVGFTFHLTSLLTLQILTNSYNTYLRYSPTPYQIKISP PSSLCIAASQLSPMKPYLFAWLISLLVPLLPILMGSRNASLVSGRWLEDQRSLLLQLKQSLTFNQSLSGKLAGWNASADCCQWPGISCDPDGLGHVIGLN LNDEYITGGGGLDNSTALYSLQHLEDLDLSGNNFQTNVPAALANLTNLRYLDLSYAGFFGQIPATISQLKLQSLTVDGVEKYYIFLISIGISFNIFPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71390		AtRLP11	receptor like protein 11 (.1)		Lus10016401 [exp]	0	1
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10016402 [exp]	1.0	0.9143
AT5G66900			Disease resistance protein (CC...		Lus10022464 [exp]	3.5	0.8048
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10041851 [exp]	4.2	0.8354
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10007045 [exp]	5.7	0.7908
AT1G09030	CCAAT	NF-YB4	"nuclear factor Y, subunit B4"...		Lus10029908 [exp]	13.0	0.7349
AT5G37710			alpha/beta-Hydrolases superfam...		Lus10010983 [exp]	14.1	0.8014
AT1G74830			Protein of unknown function, D...		Lus10033123 [exp]	14.1	0.8008
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10036136 [exp]	14.4	0.8016
					Lus10027784 [exp]	14.5	0.7579
AT2G24990			Serine/threonine-protein kinas...		Lus10032627 [exp]	16.7	0.7972

Compare expression of checked genes

Lus10016401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.