Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33060 301 / 4e-91 AtRLP27 receptor like protein 27 (.1) AT1G47890 305 / 7e-91 AtRLP7 receptor like protein 7 (.1) AT2G33050 298 / 3e-90 AtRLP26 receptor like protein 26 (.1) AT2G33020 295 / 1e-88 AtRLP24 receptor like protein 24 (.1) AT3G11010 296 / 2e-88 AtRLP34 receptor like protein 34 (.1) AT2G32660 288 / 2e-88 AtRLP22 receptor like protein 22 (.1) AT4G13810 287 / 2e-86 AtRLP47 receptor like protein 47 (.1.2) AT5G25910 288 / 3e-86 AtRLP52 receptor like protein 52 (.1) AT1G45616 291 / 4e-86 AtRLP6 receptor like protein 6 (.1) AT3G05650 289 / 4e-86 AtRLP32 receptor like protein 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019693 [exp] 1040 / 0 AT2G33050 295 / 1e-91 receptor like protein 26 (.1) Lus10042239 [exp] 749 / 0 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10026415 [exp] 744 / 0 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10003389 [exp] 656 / 0 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10006825 [exp] 637 / 0 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10004310 [exp] 633 / 0 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10004313 [exp] 591 / 0 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10002214 [exp] 456 / 4e-154 AT3G05660 293 / 2e-89 receptor like protein 33 (.1) Lus10004309 [exp] 450 / 4e-154 AT1G47890 225 / 6e-66 receptor like protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120532 [exp] 597 / 0 AT1G45616 325 / 9e-98 receptor like protein 6 (.1) Potri.016G120600 [exp] 575 / 0 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.001G128400 [exp] 430 / 1e-137 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.001G437700 [exp] 355 / 8e-110 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.011G021400 [exp] 350 / 8e-108 AT3G11080 375 / 2e-114 receptor like protein 35 (.1) Potri.016G126900 [exp] 347 / 5e-107 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.001G389100 [exp] 347 / 5e-107 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.012G027600 [exp] 339 / 5e-103 AT1G71400 395 / 1e-121 receptor like protein 12 (.1) Potri.016G127000 [exp] 330 / 3e-100 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.011G104600 [exp] 332 / 6e-100 AT2G15080 421 / 5e-129 receptor like protein 19 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10016402 pacid=23161842 polypeptide=Lus10016402 locus=Lus10016402.g ID=Lus10016402.BGIv1.0 annot-version=v1.0 ATGCTTACCTACATTAACGTTGCGGACAATGCCTTCAACGGAAGCATCCCACCATCTTTATTCGCCATTCCATCCTTGCAGTTTATCAGGCTATCCTTCA ACCAACTTCAAGGTCAGGCTCCAGAGTACCAAAATGTTACTTCTTCGGCTCTTCAAACATTAGGTTTGAGTTGCAACAATTTGGAAGGCTCAATCCCTCG TTCCTATTTTGAAATTAGGACACTTCAAGCTCTTTCACTTTCATCCAATAGATTCACTGGAATCGTACAATTTACTTGGATTCAGAAGCTCCAAAATCTA GACTACCTTGTCCTTTCATACAATAACGTAACAGTGGATGCCAGAGACACCAACTTTTCCACCTTGTCCAAGTTTCCCCAATTCTCCAAGTTAAAATTGG CATCATGCAATCTGAGAAAATTTCCAATTTTAGGCAACCAATCAAGGTTAGAAGTTCTAGATCTTTCGAACAACTTTATTGATGGGGTGATACCTGGCTG GATTCTAGAATCATCTACTCTACAATATCTAGACCTTTCAAACAACTCATGTGATGGGGTGATACCTCGCTGGATTCTAGAATCATCTACTCTGCAACAT CTCAATCTTTCGCATAACAATCTGTTGGGCTTTGAGATACAGCATATTTATCTTCCTCATCTTGAGTCCTTGGACATACATGACAACAAGCTCCATGGAG ATATTCCACTCATTTCATCAACATTGTACTACGTAGACTACTCCAACAATCTTTTCAATGGTTCCATTCCGGCTGAATTCGGCAATTACCTTTCCTCTGC ATTCTTTTCAGTATCAAATAATAGCCTCGAAGGAGCGATTCCCTCGAGTATTTGCAATGCTTCAAATCTTCAAGTCCTTGATTTGTCAAGCAACCATTTC AGTGAGATTCCGAAATGTTTGATAAGGAACACAAGGCTTATGGTTTTAGATTTGAAGGGCAATAAGCTCAGTGGAGGCATACCTGACGTATTCCAAGCTT CATGTCAACTGCAAACTCTTGATCTCAGTAACAACCAGTTGCAAGGAAAAGTTCCAAAGTCCTTGGACAACTGTACAGTATTAGAAGTCTTGGACCTTGG GAACAACAAAATGTCTGATGTCTTTCCCTGCTTCTTGAGAAACAAATCTAGTTTGAGTGTTCTTATCCTGAGGAACAACCTTTTCCATGGGAGCATGTCG TGTCGAGACAATCTTCCTGGTTCTTGGCCAAAGCTTCAAGTTGTTGATTTAGCTTCCAACAATTTTTCGGGTCTATTAAACGGTAAGTTATTAGCTACGT GGGAAGCAATGACTGGAGGCGAGAAGGAAAGCCATGATCACCCTGAGAATATGCTTCCCTCAACAAGAAATTATGAAAATTCCATAACTGTGATCAACAA GGGTCTCGAGATGGTACTTATCAAGATAGTCCTGACACTGTTCAGATCTATTGATTTCTCAAGCAATAATTTTCATGGGCCATTACCAGAAGTTATAGGA GAATTCGGTGGACTTCATGCTCTGAATTTGTCCCACAATGCTCTCACTGGCCAGATTCCATCAGTGTTTGGCTGTCTGTCAAACCTGGAGTCTTTGGATC TCTCCCACAACAAGCTCAGTGGACAGATCCCAAAAGAGCTAGCAAGCCTGACTTTCCTCTCAGTCCTGAATCTGTCAGATAATCATCTGGTTGGAAAAAT TCCGACAGATAGACAGTTCCATACATTTGACAACACTTCCTTTGAAGGTAATCCATATTTGTGCGGATATCCTTTGTCCAAAACTTGCAATCCAAGTCAT CCAGAAGCTACTGCCAGCCCTGATGATAAATCCACTACAAGAATCAACTGGGACATCCTAAGCAAAGCATTTGGATATATCTTCGGATTAGGTCTTGTTA TGCTACCAGCTGCACTATGGCCAAGCTTTCGAATTTGGTACTGGCCAAAGATTGATTCTTTACTCCTATGGGTGTTCCCAAAGTTATACGTGAAGGACTG GAACAATCGCCTTAGGACAAGGCGAAGCCAGCAGCGTAGCAAGAAAGCAATGACTAGCTAG
AA sequence Show only first row Show all	>Lus10016402 pacid=23161842 polypeptide=Lus10016402 locus=Lus10016402.g ID=Lus10016402.BGIv1.0 annot-version=v1.0 MLTYINVADNAFNGSIPPSLFAIPSLQFIRLSFNQLQGQAPEYQNVTSSALQTLGLSCNNLEGSIPRSYFEIRTLQALSLSSNRFTGIVQFTWIQKLQNL DYLVLSYNNVTVDARDTNFSTLSKFPQFSKLKLASCNLRKFPILGNQSRLEVLDLSNNFIDGVIPGWILESSTLQYLDLSNNSCDGVIPRWILESSTLQH LNLSHNNLLGFEIQHIYLPHLESLDIHDNKLHGDIPLISSTLYYVDYSNNLFNGSIPAEFGNYLSSAFFSVSNNSLEGAIPSSICNASNLQVLDLSSNHF SEIPKCLIRNTRLMVLDLKGNKLSGGIPDVFQASCQLQTLDLSNNQLQGKVPKSLDNCTVLEVLDLGNNKMSDVFPCFLRNKSSLSVLILRNNLFHGSMS CRDNLPGSWPKLQVVDLASNNFSGLLNGKLLATWEAMTGGEKESHDHPENMLPSTRNYENSITVINKGLEMVLIKIVLTLFRSIDFSSNNFHGPLPEVIG EFGGLHALNLSHNALTGQIPSVFGCLSNLESLDLSHNKLSGQIPKELASLTFLSVLNLSDNHLVGKIPTDRQFHTFDNTSFEGNPYLCGYPLSKTCNPSH PEATASPDDKSTTRINWDILSKAFGYIFGLGLVMLPAALWPSFRIWYWPKIDSLLLWVFPKLYVKDWNNRLRTRRSQQRSKKAMTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10016402 [exp]	0	1
AT1G71390		AtRLP11	receptor like protein 11 (.1)		Lus10016401 [exp]	1.0	0.9143
					Lus10027784 [exp]	1.7	0.8259
AT1G74830			Protein of unknown function, D...		Lus10033123 [exp]	4.2	0.8470
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10007045 [exp]	5.9	0.7888
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10041851 [exp]	7.5	0.8220
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10017392 [exp]	8.4	0.7590
AT3G27027			Protein of unknown function (D...		Lus10032029 [exp]	11.0	0.7626
AT2G46580			Pyridoxamine 5'-phosphate oxid...		Lus10030234 [exp]	11.5	0.7440
AT5G37710			alpha/beta-Hydrolases superfam...		Lus10010983 [exp]	11.8	0.8160
AT5G14710			unknown protein		Lus10014543 [exp]	12.4	0.7742

Compare expression of checked genes

Lus10016402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.