Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52080 804 / 0 CHX28 cation/hydrogen exchanger 28 (.1) AT2G13620 340 / 1e-104 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G05580 281 / 2e-82 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT5G41610 275 / 2e-80 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT4G23700 262 / 1e-75 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT3G17630 258 / 2e-74 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT2G31910 251 / 2e-71 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT1G16380 247 / 2e-70 ATCHX1 CATION EXCHANGER 1, Cation/hydrogen exchanger family protein (.1) AT3G53720 224 / 6e-62 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT1G64170 218 / 5e-60 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019716 [exp] 1509 / 0 AT3G52080 857 / 0.0 cation/hydrogen exchanger 28 (.1) Lus10029506 [exp] 1278 / 0 AT3G52080 850 / 0.0 cation/hydrogen exchanger 28 (.1) Lus10035312 [exp] 319 / 7e-96 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10030013 [exp] 308 / 2e-92 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10017540 [exp] 294 / 5e-87 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10032332 [exp] 281 / 1e-82 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10024131 [exp] 263 / 6e-77 AT1G79400 580 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Lus10024132 [exp] 263 / 2e-76 AT1G16380 641 / 0.0 CATION EXCHANGER 1, Cation/hydrogen exchanger family protein (.1) Lus10004932 [exp] 264 / 6e-76 AT2G13620 568 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G059400 [exp] 1038 / 0 AT3G52080 803 / 0.0 cation/hydrogen exchanger 28 (.1) Potri.001G264600 [exp] 926 / 0 AT3G52080 710 / 0.0 cation/hydrogen exchanger 28 (.1) Potri.007G105200 [exp] 305 / 1e-91 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.001G096320 [exp] 300 / 6e-90 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 300 / 7e-90 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.003G194200 [exp] 284 / 6e-84 AT1G79400 625 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Potri.010G004800 [exp] 283 / 3e-83 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.003G134900 [exp] 281 / 1e-82 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G005200 [exp] 280 / 5e-82 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.003G194100 [exp] 277 / 2e-81 AT1G79400 597 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10016403 pacid=23161837 polypeptide=Lus10016403 locus=Lus10016403.g ID=Lus10016403.BGIv1.0 annot-version=v1.0 ATGGATGACAGTTTATCCATGAACAATGCCACCGCGGGGAAGCTTGATCCCGTTGATGAATCAGCTTGCCAGAACTTCATCACCTACACCGTCAAAAACG AACCTGGAAAAATCATCGGTCTCATTCTAACCTATGTTTTGAGTTACCTCCTTCACCACCTCCTCAAGCCTCTCTCCCAGCCCCGAATCGTCTCCGACAT TGCCATAGGTCTCATCATCGGCAACATACAATGGATACGCAACGCATGCGACCCAAAATTCATCGAAACACTAAACTTCATTGCGGAGTTCGGCATGATA TGCCACGTATTCACCCTCGGATTGGAGATGAACCCGAAATCGATCTTCAAAGCGCCATCTCATGACGCGATGATAGCGTACACCGGGATGATCTCGACCA TCGTTCTGGTATGCGGTACGGTGCCGTTGCTGATGTACACAAGCAAACTCGCCACCATTGGCTTCACAGTCACCTTGGCAATTGCACTAGCAGGAAGTGG CTCTCCTATCCTGACAAGGATTATAACCAACCTGAAAATTGGGAAATCGGACATAGGTAAGCTCGTGATTGCGGCGGGGCTTTACTCCGACCTAGTGTCG ATGTTCCTTCTCTGCTTCGGCTACCTCTTAGGACCCACCAGCAAAATGGAGACGACGAATCGCCTGATCAAGGCGTTGACGATGGGAGTCGCATTGCTGC TCCAGACCTTGTTTGCTGCCAAGATTTCGCCGATTTTCATGAGATGGGTCAACAACGAGAACCCTGAAGGGAAACCGATGAAAGGTTCGCATTTGGTGCT CGCCATTGCGTTCATGGTCCTGGTTTGTAGCGCTTCCCCGATATATGGGTATAGCCCGATTTTGAGCGCGTTCATGGCTGGAATTTTTCTCCCGAACGAA GGCAGGGTGTCGAAATGGGCGGTTGGGAAGATCAACTATCTTTTGACGACGGTTTTCTACCCGGTTTTCTTCTTCTGGATGGGGATTCATGCCGAGCTTC GACTGTTTAAGGTGGGGCATTGGATGACTTGGGCGAGGCTGTTTGTTCTTCTGGGCATCTCGGTGTTCGGAAAGGTTATTGGGACGGCCGCCTGTGGAGC GATGCTGGGATTCCATTGGCGCGAATCCGCCGAGCTTGGACTTCTGTTGAATGTCAAGGGTCATTTCCACGTGTTCCTTGCTATCTCTGGTCGTGTGTAT AGTGTTATACCAACGTCGACAAGTATCATGATCATTGTGGCGATCTTTATCACGATCGTGCAAGCACCGTCGATCGTGCTGCAAATCATCAAGCGGGCTA GAAGACGCGCCCCGACTCATCAGAGGGCGCTTCAGATGCTCGACCCTGTGAACGAGCTTCGAGTGTTGTTGTGCCTGCACGGTCCGCACAACATCAACTC ATCGATCAACTTCATGGAGATAACTCGAGGGACGCCTGATCCCGGAATTATGGTATTTGTAACCGACATGGTTGAGCTTACCGACCAGATTGCGGCTACT TTAGTGCAGAGCGAAGGATTGGACACGGTCACTGTGACAGACAAGGACGTTACGGAGATGAGAGACCTTATCACCAACCACATACAGGGCTACGTAGATG AGAGCGGCGAAGGCATATCGATTAGGAGAATGCTTGCTCTCTCGACGTTCAATGGCATGGCGCAGGACATTTTCATGTTGGGAGAAGACTTGATGGCCAC CTTGATCATACTTCCGTTTCACAAAACTCTACGAGAAGACGGGACTCTGGATACCGGAAATCCAGGGTTTCGTTACGTGAATCGCAAGCTCCTTAGGAAT GCACCGTGTTCCGTCGGCATATTGGTGGACCGAGGTTTCGGAGCATTAGAGAACATATCACGGACTCCGAAATCAGTTCTTGTAGCTGTCATTTTCATCG GTGGGAGAGATGACAGAGAAGCACTAGCATATGCCGGCCGGGTGGCAAGACATCCCGGGGTGAAGCTCACGGTGTTGAGGTTTCTACTCGACGATAGCTT GGAATCCTCAAGAAGAGGCAACTACAGAGTAAACGTGGCGGAGAAAGAAGAAGAAGTGAAGCTCGACGACGAATGCTTCGCCCACTTCTACGAGAGACAC GTCGCGGCCGGGCACGTCGCATACATGGAGAAGCATCTGGCCAATTCGGCCGCAACTTATTCGACACTGAGATCGTTGGAAGGACAGTACGCGCTCATTA TCGTAGGGAGGGGAGGAAGGGTGGACTCGATATTGACAATCGGGATGAACGATTGGCAGCAGTGCCCGGAATTAGGACCGGTGGGTGATGTTCTTTCGGG TTCCGACCTCTCGCACAGGACTTCTGTTTTGATCATCCAACAACACAACATCAAAGGAGAATTGCAGGGTGTAGAGGATGATTTCAATATCATGTAA
AA sequence Show only first row Show all	>Lus10016403 pacid=23161837 polypeptide=Lus10016403 locus=Lus10016403.g ID=Lus10016403.BGIv1.0 annot-version=v1.0 MDDSLSMNNATAGKLDPVDESACQNFITYTVKNEPGKIIGLILTYVLSYLLHHLLKPLSQPRIVSDIAIGLIIGNIQWIRNACDPKFIETLNFIAEFGMI CHVFTLGLEMNPKSIFKAPSHDAMIAYTGMISTIVLVCGTVPLLMYTSKLATIGFTVTLAIALAGSGSPILTRIITNLKIGKSDIGKLVIAAGLYSDLVS MFLLCFGYLLGPTSKMETTNRLIKALTMGVALLLQTLFAAKISPIFMRWVNNENPEGKPMKGSHLVLAIAFMVLVCSASPIYGYSPILSAFMAGIFLPNE GRVSKWAVGKINYLLTTVFYPVFFFWMGIHAELRLFKVGHWMTWARLFVLLGISVFGKVIGTAACGAMLGFHWRESAELGLLLNVKGHFHVFLAISGRVY SVIPTSTSIMIIVAIFITIVQAPSIVLQIIKRARRRAPTHQRALQMLDPVNELRVLLCLHGPHNINSSINFMEITRGTPDPGIMVFVTDMVELTDQIAAT LVQSEGLDTVTVTDKDVTEMRDLITNHIQGYVDESGEGISIRRMLALSTFNGMAQDIFMLGEDLMATLIILPFHKTLREDGTLDTGNPGFRYVNRKLLRN APCSVGILVDRGFGALENISRTPKSVLVAVIFIGGRDDREALAYAGRVARHPGVKLTVLRFLLDDSLESSRRGNYRVNVAEKEEEVKLDDECFAHFYERH VAAGHVAYMEKHLANSAATYSTLRSLEGQYALIIVGRGGRVDSILTIGMNDWQQCPELGPVGDVLSGSDLSHRTSVLIIQQHNIKGELQGVEDDFNIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Lus10016403 [exp]	0	1
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Lus10019716 [exp]	12.2	0.7650
AT5G24600			Protein of unknown function, D...		Lus10015590 [exp]	14.0	0.7230
AT3G18590		AtENODL5	early nodulin-like protein 5 (...		Lus10022318 [exp]	18.1	0.7335
AT1G62340		ALE1	ABNORMAL LEAF-SHAPE 1, ABNORMA...		Lus10015559 [exp]	20.4	0.7210
AT2G01260			Protein of unknown function (D...		Lus10017987 [exp]	26.5	0.6608
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10000101 [exp]	30.5	0.7144
					Lus10032429 [exp]	31.3	0.6661
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10010108 [exp]	36.1	0.6731
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10020083 [exp]	38.2	0.7041
					Lus10012564 [exp]	46.9	0.6856

Compare expression of checked genes

Lus10016403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.