Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08020 521 / 2e-173 PHD finger family protein (.1) AT3G52100 272 / 7e-80 RING/FYVE/PHD-type zinc finger family protein (.1) AT3G52090 168 / 9e-49 NRPE11, NRPD11, NRPB11, ATRPB13.6 DNA-directed RNA polymerase, RBP11-like (.1.2) AT2G29540 55 / 7e-09 ATRPAC14, ATRPC14 RNApolymerase 14 kDa subunit (.1.2.3) AT1G77250 54 / 5e-07 RING/FYVE/PHD-type zinc finger family protein (.1) AT3G01460 44 / 0.0008 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019715 [exp] 1381 / 0 AT3G08020 726 / 0.0 PHD finger family protein (.1) Lus10042764 [exp] 59 / 2e-08 AT1G77250 301 / 1e-95 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10029733 [exp] 57 / 4e-08 AT1G77250 313 / 5e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10040717 [exp] 52 / 4e-08 AT2G29540 132 / 3e-41 RNApolymerase 14 kDa subunit (.1.2.3) Lus10016452 [exp] 52 / 5e-08 AT2G29540 131 / 9e-41 RNApolymerase 14 kDa subunit (.1.2.3) Lus10000973 [exp] 48 / 5e-05 AT1G77260 652 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028655 [exp] 45 / 0.0002 AT1G77250 259 / 1e-79 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10020350 [exp] 45 / 0.0004 AT3G02890 439 / 2e-131 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10030864 [exp] 44 / 0.0007 AT3G01460 511 / 2e-152 methyl-CPG-binding domain 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G264800 [exp] 648 / 0 AT3G08020 701 / 0.0 PHD finger family protein (.1) Potri.009G059500 [exp] 608 / 0 AT3G08020 763 / 0.0 PHD finger family protein (.1) Potri.009G059700 [exp] 597 / 0 AT3G08020 748 / 0.0 PHD finger family protein (.1) Potri.009G070900 [exp] 171 / 5e-50 AT3G52090 219 / 2e-75 DNA-directed RNA polymerase, RBP11-like (.1.2) Potri.001G246600 [exp] 52 / 3e-08 AT2G29540 136 / 6e-43 RNApolymerase 14 kDa subunit (.1.2.3) Potri.005G183700 [exp] 55 / 2e-07 AT1G77250 315 / 2e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.002G076900 [exp] 52 / 1e-06 AT1G77250 332 / 3e-107 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.017G072460 [exp] 45 / 0.0002 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016404 pacid=23161894 polypeptide=Lus10016404 locus=Lus10016404.g ID=Lus10016404.BGIv1.0 annot-version=v1.0 ATGGTTAGTCTTCTGCTCCGACGAATCTGCTTCTGCGCGCTAGGGTTTCCGCGGGATCTGCACGGTCAGAGATCCAAGGCCGATTTCCTGCTCGATGTTT CCAGGATCGAGGAGCTGCTGTTGAACGATTCCTCGCGGATTAGGGCTTCCGCCGAGGCTAAAACCGTCCAGGTTCTGGTCCCTAAGGTTGTGCCTCCTCC TGCTCCTGTTGTTCCTAGTGCTTCGATCTCGGTTCCGGTACCGGCTACTGCGTTGCCACCACCTGCTGTTGTTGTTGCTGCTGCTGCGGGAGGTGATGGT GACGGCGGAGAGGATTCAGAGGCTTTGTCTGCCAATGCGCACACCAAGCGTGTGGCGCTTCAGAAGAAGGCTGCTGCTACTATGGTTGCTGCTGAGGATT TTGCCAGGAGGTTTGAGTCTGGTGACGCTGGGGCAGTTACGAAAGACATCAATGGAGATGAGCAAGCTCTTTCCAACACAAAGGTCATGTGTCGGATGTG CTTCTCTGGTGAAAGTGAAGGCAGTGAGAAAGCAAGGAAGATGCTATCTTGTAGAACTTGTGGAAAGAAGTATCACAGGAGCTGTATGAAATCTTGGTCT CAACATAGAGATTTATTTCATTGGAGTTCATGGAACTGCCCATCTTGTCGAACATGCGAGATATGCCGAAGAACTGGAGATCCAAATAAGTTTATGTTCT GCAAAAGGTGTGATGGTGCTTACCATTGTTACTGCCAGCATCCTCCTCACAAGAATGTGAGTTCAGGACCATATTTGTGCTCCAAACATACAAGGTGCCA CAGTTGTGGGTCTACTGTCCCTGGAAATGGTTTAAGCGTGAGGTGGTTTCTGGGATACACATGCTGTGATGCGTGTGGAAGATTGTTTGTGAAGGGGAAC TACTGCCCTGTTTGTTTGAAGGTAAAAGATGTTGAAGATGCTGTTCAAGAGCTATGGAGAAGACGAGATTTAGCTGATCACGACTTGATTGCGAGCTTGA GGGCTGCTGCAGGATTGCCAACTCAAGAAGATATATTCTCTATATCACCCTACTCTGACGATGAAGAGAATGGGCTCATGACGCCAAGAAATGAGTTTGG GCGTTCTTTGAAGTTTTCCCTCAAAGGTGTCATTGACAAGTCTCCAAAGAAGAGCAAAGACCATGGAAAGAAGCATTCCAATAAAAAGTCGAGGAAAAAG AAGAGCTCCGATATACCTTCAATCAGCAATATAGATATAGATGTAGATCAGTTTGAAACACCATCTTACAGACACAGTTCTGCTGAAAAAAGGATTGATG ACTCTCAGCTTCATACAAATGCTGGTTTGGTACGACATCCTTCTCCTGTTGCTGGTATTTTGAATCACACCGTGGTGGACAACTCTGTTACTCAGCCAGG CAGTCTGCAACAGAAATCTGCTGATGAGGTGATGGTTACTGATGTGGATAACAAGGCACCAAGGGTTGTTATGCTTAAGAGCAATAAACCTCGCAATATA GATAGTGGAGGAGATAGTGACAAGCATGGCAGCAAGCTGAAATCTGGAAGAACCAAGAAGCTGGTTATAAACCTTGGTGCGCGGAAATTAAATGTTAATA GTTCTCCGAAGCCTGATGCTTCGAGCTGCCAGAAAGAACAAGATTTGCCAAATTCCAATGGAAGTGAAGATACAGTTCCTCCTAAGATACCAGCTGACAT GCCTGTGGATAAAGAGAATGGGACTGCTAAACCTGGTAGTGATGGCGGCAGAATTCATAAACCTGGCCAAGTAATTCTGAAATTTGCTCGAAGAGGGAGT AACTTGATTAAACTTGGGAAAGTGAAAGAGGCAACTGAAGGGAAACCCAAAGCTGAACGAGATAGCGGTGACGTAACCACGGCTGCAGTTGGAAGCGCCA GTGAAGTTCCGAGCGAGAAGCCACTGGAAGCAAAACAAGCCGAAGAAAGGCCAGACACAACAAATACTGATACCAATGATGAATCCGCTGGAACAAATCC ATCTCCTTCTTTGCCCAAGGATTCAAAGTTCTCTTTGAAGTTAAAGATTAAGAAACCTAGTCTGGAGACTCAAAGCTCACAAAATCCTCCGGCTGCTGAA GAAAAAACTTCATCCATAAGAGGGCAGAGGTCGAAAAGGAAACGGTCGTCAGCCTTTGCAGTACAAGACAGTGAGATGTTGGAAGCTAGTTGGATCCTCA AAAAGCTGGGAAAAGATGCAATTGGAAAGCGAGTTGAAGTCCACCAGCCATCTGAAAGCACATGGGTTTCGTACGAGAGGGACACCAAGATCATCAATGC CGCCTCCTTCACTCTAGAGAGGGAAGAGCACACCATCGGAAACATCCTCCGCATGCAGCTCCACAGGGACAAGAATGTTCTGTTTGCTGGTTACAAGCTC CCTCACCCTCTTCAGTACAAAATCCTTATCCGGATTCACACCACTAGCCAGTCTTCACCAATGCAAGCATATAACCAAGCCATCAATGATCTAGACAAGG AACTTGATCACTTGAGATCAGAGTTTGAGGTATGGAAGTATGCTGTCACTTTTTCCTATTTAAAACTTACAGAGGTATCTGTGATAAACAAGTAA
AA sequence Show only first row Show all	>Lus10016404 pacid=23161894 polypeptide=Lus10016404 locus=Lus10016404.g ID=Lus10016404.BGIv1.0 annot-version=v1.0 MVSLLLRRICFCALGFPRDLHGQRSKADFLLDVSRIEELLLNDSSRIRASAEAKTVQVLVPKVVPPPAPVVPSASISVPVPATALPPPAVVVAAAAGGDG DGGEDSEALSANAHTKRVALQKKAAATMVAAEDFARRFESGDAGAVTKDINGDEQALSNTKVMCRMCFSGESEGSEKARKMLSCRTCGKKYHRSCMKSWS QHRDLFHWSSWNCPSCRTCEICRRTGDPNKFMFCKRCDGAYHCYCQHPPHKNVSSGPYLCSKHTRCHSCGSTVPGNGLSVRWFLGYTCCDACGRLFVKGN YCPVCLKVKDVEDAVQELWRRRDLADHDLIASLRAAAGLPTQEDIFSISPYSDDEENGLMTPRNEFGRSLKFSLKGVIDKSPKKSKDHGKKHSNKKSRKK KSSDIPSISNIDIDVDQFETPSYRHSSAEKRIDDSQLHTNAGLVRHPSPVAGILNHTVVDNSVTQPGSLQQKSADEVMVTDVDNKAPRVVMLKSNKPRNI DSGGDSDKHGSKLKSGRTKKLVINLGARKLNVNSSPKPDASSCQKEQDLPNSNGSEDTVPPKIPADMPVDKENGTAKPGSDGGRIHKPGQVILKFARRGS NLIKLGKVKEATEGKPKAERDSGDVTTAAVGSASEVPSEKPLEAKQAEERPDTTNTDTNDESAGTNPSPSLPKDSKFSLKLKIKKPSLETQSSQNPPAAE EKTSSIRGQRSKRKRSSAFAVQDSEMLEASWILKKLGKDAIGKRVEVHQPSESTWVSYERDTKIINAASFTLEREEHTIGNILRMQLHRDKNVLFAGYKL PHPLQYKILIRIHTTSQSSPMQAYNQAINDLDKELDHLRSEFEVWKYAVTFSYLKLTEVSVINK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08020			PHD finger family protein (.1)		Lus10016404 [exp]	0	1
AT1G80960			F-box and Leucine Rich Repeat ...		Lus10028602 [exp]	2.0	0.8504
AT5G09390			CD2-binding protein-related (....		Lus10009320 [exp]	2.2	0.8491
AT1G50410			SNF2 domain-containing protein...		Lus10041008 [exp]	3.5	0.8787
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10024895 [exp]	4.2	0.8776
AT3G22520			unknown protein		Lus10006124 [exp]	6.2	0.8225
AT1G61470			Polynucleotidyl transferase, r...		Lus10001651 [exp]	8.2	0.7989
AT4G21060			Galactosyltransferase family p...		Lus10036154 [exp]	8.5	0.8305
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Lus10011742 [exp]	8.7	0.7946
AT3G09100			mRNA capping enzyme family pro...		Lus10035534 [exp]	9.9	0.8552
AT3G27260		GTE8	global transcription factor gr...		Lus10032076 [exp]	10.0	0.8125

Compare expression of checked genes

Lus10016404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.