Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63510 575 / 0 FMN-linked oxidoreductases superfamily protein (.1.2) AT5G47970 566 / 0 Aldolase-type TIM barrel family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019714 [exp] 747 / 0 AT3G63510 596 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2) Lus10029508 [exp] 639 / 0 AT3G63510 618 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2) Lus10039605 [exp] 620 / 0 AT3G63510 619 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2) Lus10016407 [exp] 554 / 0 AT3G63510 374 / 6e-130 FMN-linked oxidoreductases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G264900 [exp] 652 / 0 AT3G63510 607 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2) Potri.009G059900 [exp] 624 / 0 AT3G63510 591 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01207 [flax] [poplar] Dus Dihydrouridine synthase (Dus)
Representative CDS sequence Show only first row Show all	>Lus10016405 pacid=23161825 polypeptide=Lus10016405 locus=Lus10016405.g ID=Lus10016405.BGIv1.0 annot-version=v1.0 ATGGTGAAGGTTTCAGGATATTCTTTGATAGCTTCATTGACTCCATTTCGTTTTACTCCCCTGTCAAATCCTCGCAGATTGCCACTAGATATATGTTTTA AGACTTCATCGAAGATTAGACCGCTGTCTCGTATTCTCAGAAGCAGCAGTTGCATTCAAAAGCTGAGATGGTGGTTGCAAAGTATCAGCCTCCTCTTTTT AGGTCGTGTTGCTCCAATGATGGAATGGACAGACAACCACTACAGGACTCTTGCTAGGATCTTATCAAAACATGCGTGGCTTTACACTGAGATGCTGGCA GCTGAAACGATTGTTTACCAAGAGCGGAATCTGGACAGATTTTTGGCTTACTCGCCCGAGCAGCATCCCATTGTACTTCAAATTGGGGGAAATAACTTGG ATAACATTGCAAAAGCGATAAAACTTGCTAATGCATATAACTACGATGAGATCAATTTGAATTGTGGTTGTCCTAGTCCGAGGGTGGCTGGACATGGGTG TTTCGGCGTCCGCCTTATGCTTGATCCGAAGTTTGTTGCCGAGGCTATGTCAGTAATTGCTGCTAATACCGACGTTCCTGTCAGTGTCAAATGCCGAATT GGTCTAGATGATCATGATTCTTATAATGAGCTTTGTGATTTTATATATAAAGTGTCTGCTCTTTCCCCAACTAAGCATTTTGTAATACATTCACGGAAAG CTTTGCTCAATGGCGTCAGCCCTGCCGACAATAGAAAAATTCCTCCTCTGAAATATGAGTACTATTATGCTCTCTTGCGTGATTTTCCTGACTTGAAATT TACAATAAATGGTGGAATCAACAATGTTGGTGAGGTTAGCTTCTCCACTGGTGTGGCATGCACCTTTCTTGCGTGCAAGTTCCCTTTGTCTGCAAATGCA GCGCTGAAGGCAGGAGCACATGGTGTAATGGTTGGACGTGCTGCTTATTACAATACCTGGAATGTTTTGGGACATGTTGATACTGATATCTATGGGGCAC CGCCAAGTGGTCTTACACGTCGTCAGGTCCTCGAACAGTATCAAGTATATGGTGACTCTATTCTTGGCACCTATGGCAACAATAGGCCTAGTCTCCGGGA TGTGATGAAGCCTATACTCGGATTCTTTTATTCTGAGCCTGGGAACAGTCTCTGGAAACGCAAAGCTGATGCTGCATTCCTGAAATGCAAGACGGTTAAA TCCTTTCTCGACGAAGCCCTCGAAGCGATTCCCGACAGAGTCTTGGACGCCACTGTTGCTGAAGCACCATTGGGCCGCGAAGATCTTTTTGCTAACGTCA AAGGAATCCTCCCACCTCCATATGAAACCAGAGAAGAAGAGGAGCTGATGTATGCTTAA
AA sequence Show only first row Show all	>Lus10016405 pacid=23161825 polypeptide=Lus10016405 locus=Lus10016405.g ID=Lus10016405.BGIv1.0 annot-version=v1.0 MVKVSGYSLIASLTPFRFTPLSNPRRLPLDICFKTSSKIRPLSRILRSSSCIQKLRWWLQSISLLFLGRVAPMMEWTDNHYRTLARILSKHAWLYTEMLA AETIVYQERNLDRFLAYSPEQHPIVLQIGGNNLDNIAKAIKLANAYNYDEINLNCGCPSPRVAGHGCFGVRLMLDPKFVAEAMSVIAANTDVPVSVKCRI GLDDHDSYNELCDFIYKVSALSPTKHFVIHSRKALLNGVSPADNRKIPPLKYEYYYALLRDFPDLKFTINGGINNVGEVSFSTGVACTFLACKFPLSANA ALKAGAHGVMVGRAAYYNTWNVLGHVDTDIYGAPPSGLTRRQVLEQYQVYGDSILGTYGNNRPSLRDVMKPILGFFYSEPGNSLWKRKADAAFLKCKTVK SFLDEALEAIPDRVLDATVAEAPLGREDLFANVKGILPPPYETREEEELMYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63510			FMN-linked oxidoreductases sup...		Lus10016405 [exp]	0	1
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10009682 [exp]	1.0	0.8938
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Lus10004053 [exp]	5.7	0.8592
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10018357 [exp]	6.0	0.8760
AT1G29370			Kinase-related protein of unkn...		Lus10007339 [exp]	8.5	0.8398
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Lus10031336 [exp]	11.7	0.8422
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10041933 [exp]	16.4	0.8159
AT4G14910		HISN5B, IGPD	HISTIDINE BIOSYNTHESIS 5B (.1....		Lus10041717 [exp]	17.9	0.8014
AT1G72040			P-loop containing nucleoside t...		Lus10008257 [exp]	18.3	0.8415
AT5G08780			winged-helix DNA-binding trans...		Lus10002941 [exp]	21.2	0.8306
AT1G06440			Ubiquitin carboxyl-terminal hy...		Lus10041673 [exp]	23.5	0.8228

Compare expression of checked genes

Lus10016405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.